Year Item Type Full Text

2025

The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health. (2025) Dyson, Zoe A; Cerdeira, Louise; Sharma, Vandana; Carey, Megan E; Holt, Kathryn E; Aanensen, David M; Abbas, Ali H; Fayad, Antoine Abou; Afolayan, Ayorinde O; Ahmed, Niyaz; Ahmed, Irshad; Amir, Afreenish; Andleeb, Saadia; Argimón, Silvia; Aseffa, Abraham; Ashton, Philip M; Aworh, Mabel K; Bavdekar, Ashish R; Chattaway, Marie A; Chew, Ka Lip; Crump, John A; Darton, Thomas C; Diaz, Paula L; Dolecek, Christiane; Feasey, Nicholas A; Greenhill, Andrew R; Gupta, Madhu; Hatta, Mochammad; Hendriksen, Rene S; Heyderman, Robert S; Ikhimiukor, Odion O; Ikram, Aamer; Ingle, Danielle J; Kapil, Arti; Keane, Jacqueline A; Keddy, Karen H; Kingsley, Robert A; Levine, Myron M; MacLennan, Calman A; Maes, Mailis; Mahindroo, Jaspreet; Mashe, Tapfumanei; Morita, Masatomo; Mylona, Elli; Nagaraj, Geetha; Nair, Satheesh; Naseri, Take K; Njamkepo, Elisabeth; Octavia, Sophie; Okeke, Iruka N; Owusu, Michael; de la Gandara, Maria Pardos; Pollard, Andrew J; Rahman, Sadia IA; Rahman, Saikt; Rasko, David A; Redwan, Elrashdy M; Rokney, Assaf; Rupali, Priscilla; Rutanga, Jean Pierre; Shakya, Jivan; Saha, Senjuti; Sikorski, Michael J; Smith, Anthony M; Tagg, Kaitlin A; Taneja, Neelam; Tamrakar, Dipesh; Turner, Paul; Ussher, James E; Van Puyvelde, Sandra; Vandelannoote, Koen; Weill, François-Xavier; Wong, Vanessa K; Wright, Jackie

2023

Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization. (2023) Carey, Megan E; Dyson, Zoe A; Argimón, Silvia; Cerdeira, Louise; Yeats, Corin; Aanensen, David; Mboowa, Gerald; Baker, Stephen; Tessema, Sofonias K; Smith, Anthony M; Okeke, Iruka N; Holt, Kathryn E

2022

Linear plasmids in Klebsiella and other Enterobacteriaceae. (2022) Hawkey, Jane; Cottingham, Hugh; Tokolyi, Alex; Wick, Ryan R; Judd, Louise M; Cerdeira, Louise; de Oliveira Garcia, Doroti; Wyres, Kelly L; Holt, Kathryn E

Wolbachia endosymbionts in two Anopheles species indicates independent acquisitions and lack of prophage elements. (2022) Quek, Shannon; Cerdeira, Louise; Jeffries, Claire L; Tomlinson, Sean; Walker, Thomas; Hughes, Grant L; Heinz, Eva

2021

Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei. (2021) Hawkey, Jane; Paranagama, Kalani; Baker, Kate S; Bengtsson, Rebecca J; Weill, François-Xavier; Thomson, Nicholas R; Baker, Stephen; Cerdeira, Louise; Iqbal, Zamin; Hunt, Martin; Ingle, Danielle J; Dallman, Timothy J; Jenkins, Claire; Williamson, Deborah A; Holt, Kathryn E

A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex. (2021) Lam, Margaret MC; Wick, Ryan R; Watts, Stephen C; Cerdeira, Louise T; Wyres, Kelly L; Holt, Kathryn E

Trycycler: consensus long-read assemblies for bacterial genomes. (2021) Wick, Ryan R; Judd, Louise M; Cerdeira, Louise T; Hawkey, Jane; Méric, Guillaume; Vezina, Ben; Wyres, Kelly L; Holt, Kathryn E

2019

Small IncQ1 and Col-Like Plasmids Harboring blaKPC-2 and Non-Tn4401 Elements (NTEKPC-IId) in High-Risk Lineages of Klebsiella pneumoniae CG258. (2019) Cerdeira, Louise T; Lam, Margaret MC; Wyres, Kelly L; Wick, Ryan R; Judd, Louise M; Lopes, Ralf; Ribas, Rosineide M; Morais, Marcia M; Holt, Kathryn E; Lincopan, Nilton