Campos, Monica; Phelan, Jody; Spadar, Anton; Collins, Emma; Gonçalves, Adéritow; Pelloquin, Bethanie; Vaselli, Natasha Marcella; Meiwald, Anne; Clark, Emma; Stica, Caleb; +12 more... Orsborne, James; Sylla, Moussa; Edi, Constant; Camara, Denka; Mohammed, Abdul Rahim; Afrane, Yaw Asare; Kristan, Mojca; Walker, Thomas; Gomez, Lara Ferrero; Messenger, Louisa A; Clark, Taane G; Campino, Susana; (2022) High-throughput barcoding method for the genetic surveillance of insecticide resistance and species identification in Anopheles gambiae complex malaria vectors. Scientific Reports, 12 (1). 13893-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-022-17822-8

Collins, Emma L; Phelan, Jody E; Hubner, Magdalena; Spadar, Anton; Campos, Monica; Ward, Daniel; Acford-Palmer, Holly; Gomes, Ana Rita; Silva, Keily; Ferrero Gomez, Lara; +2 more... Clark, Taane G; Campino, Susana; (2022) A next generation targeted amplicon sequencing method to screen for insecticide resistance mutations in Aedes aegypti populations reveals a rdl mutation in mosquitoes from Cabo Verde. PLoS neglected tropical diseases, 16 (12). e0010935-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0010935

Perdigão, João; Caneiras, Cátia; Elias, Rita; Modesto, Ana; Spadar, Anton; Phelan, Jody; Campino, Susana; Clark, Taane G; Costa, Eliana; Saavedra, Maria José; +1 more... Duarte, Aida; (2020) Genomic Epidemiology of Carbapenemase Producing Klebsiella pneumoniae Strains at a Northern Portuguese Hospital Enables the Detection of a Misidentified Klebsiella variicola KPC-3 Producing Strain. MICROORGANISMS, 8 (12). p. 1986. ISSN 2076-2607 DOI: https://doi.org/10.3390/microorganisms8121986

Perdigão, João; Modesto, Ana; Pereira, AL; Neto, O; Matos, V; Godinho, A; Phelan, Jody; Charleston, James; Spadar, Anton; de Sessions, Paola Florez; +9 more... Hibberd, Martin; Campino, Susana; Costa, A; Fernandes, F; Ferreira, F; Correia, AB; Gonçalves, Luisa; Clark, Taane G; Duarte, Aida; (2020) Whole-genome sequencing resolves a polyclonal outbreak by extended-spectrum beta-lactam and carbapenem-resistant Klebsiella pneumoniae in a Portuguese tertiary-care hospital. Microbial genomics, 7 (6). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000349

Spadar, Anton; Perdigão, João; Campino, Susana; Clark, Taane G; (2022) Genomic analysis of hypervirulent Klebsiella pneumoniae reveals potential genetic markers for differentiation from classical strains. Scientific Reports, 12 (1). 13671-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-022-17995-2

Spadar, Anton; Perdigão, João; Campino, Susana; Clark, Taane G; (2023) Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains. Genome medicine, 15 (1). 3-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-023-01153-y

Spadar, Anton; Perdigão, João; Phelan, Jody; Charleston, James; Modesto, Ana; Elias, Rita; de Sessions, Paola Florez; Hibberd, Martin L; Campino, Susana; Duarte, Aida; +1 more... Clark, Taane G; (2021) Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals. Scientific reports, 11 (1). 6491-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-021-85724-2

Spadar, Anton; Phelan, Jody E; Benavente, Ernest Diez; Campos, Monica; Gomez, Lara Ferrero; Mohareb, Fady; Clark, Taane G; Campino, Susana; (2021) Flavivirus integrations in Aedes aegypti are limited and highly conserved across samples from different geographic regions unlike integrations in Aedes albopictus. Parasites & vectors, 14 (1). 332-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-021-04828-w

Spadar, Anton; Phelan, Jody E; Clark, Taane G; Campino, Susana; (2023) Large-scale reference-free analysis of flavivirus sequences in Aedes aegypti whole genome DNA sequencing data. Parasites & vectors, 16 (1). 265-. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-023-05898-8

Spadar, Anton; Phelan, Jody; Elias, Rita; Modesto, Ana; Caneiras, Cátia; Marques, Cátia; Lito, Luís; Pinto, Margarida; Cavaco-Silva, Patrícia; Ferreira, Helena; +8 more... Pomba, Constança; Da Silva, Gabriela J; Saavedra, Maria José; Melo-Cristino, José; Duarte, Aida; Campino, Susana; Perdigão, João; Clark, Taane G; (2022) Genomic epidemiological analysis of Klebsiella pneumoniae from Portuguese hospitals reveals insights into circulating antimicrobial resistance. Scientific Reports, 12 (1). 13791-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-022-17996-1

Turkiewicz, Anna; Manko, Emilia; Oresegun, Damiola R; Nolder, Debbie; Spadar, Anton; Sutherland, Colin J; Cox-Singh, Janet; Moon, Robert W; Lau, Yee-Ling; Campino, Susana; +1 more... Clark, Taane G; (2023) Population genetic analysis of Plasmodium knowlesi reveals differential selection and exchange events between Borneo and Peninsular sub-populations. Scientific reports, 13 (1). 2142-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-023-29368-4