Suau Sans, Maria; Manneh, Muhammed; Ceesay, Isatou; Bittaye, Amat; de Crombrugghe, Gabrielle; Keeley, Alexander J; de Silva, Thushan I; Palmer, Jennifer; Armitage, Edwin P; Marks, Michael; +1 more... MRCG Strep A Study Group; (2024) Health-seeking behaviour and beliefs around sore throat in The Gambia: A qualitative study. PLOS Glob Public Health, 4 (3). e0002257-. ISSN 2767-3375 DOI: https://doi.org/10.1371/journal.pgph.0002257

Armitage, Edwin P; Keeley, Alex J; de Crombrugghe, Gabrielle; Senghore, Elina; Camara, Fatoumatta E; Jammeh, Musukoi; Bittaye, Amat; Ceesay, Haddy; Ceesay, Isatou; Samateh, Bunja; +6 more... Manneh, Muhammed; Sesay, Abdul Karim; Kampmann, Beate; Kucharski, Adam; de Silva, Thushan I; Marks, Michael; (2023) Streptococcus pyogenes carriage acquisition, persistence and transmission dynamics within households in The Gambia (SpyCATS): protocol for a longitudinal household cohort study. Wellcome Open Research, 8. p. 41. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.18716.1

Keeley, Alexander J; Groves, Danielle; Armitage, Edwin P; Senghore, Elina; Jagne, Ya Jankey; Sallah, Hadijatou J; Drammeh, Sainabou; Angyal, Adri; Hornsby, Hailey; de Crombrugghe, Gabrielle; +10 more... Smeesters, Pierre R; Rossi, Omar; Carducci, Martina; Peno, Chikondi; Bogaert, Debby; Kampmann, Beate; Marks, Michael; Shaw, Helen A; Turner, Claire R; de Silva, Thushan I; (2023) Streptococcus pyogenes Colonization in Children Aged 24-59 Months in the Gambia: Impact of Live Attenuated Influenza Vaccine and Associated Serological Responses. The Journal of infectious diseases, 228 (7). pp. 957-965. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiad153

Bah, Saikou Y; Keeley, Alexander J; Armitage, Edwin P; Khalid, Henna; Chaudhuri, Roy R; Senghore, Elina; Manneh, Jarra; Tilley, Lisa; Marks, Michael; Darboe, Saffiatou; +4 more... Sesay, Abdul K; de Silva, Thushan I; Turner, Claire E; MRCG Strep A Study Group; (2022) Genomic Characterization of Skin and Soft Tissue Streptococcus pyogenes Isolates from a Low-Income and a High-Income Setting. mSphere, 8 (1). e0046922-. DOI: https://doi.org/10.1128/msphere.00469-22

Jagne, Isatou; Keeley, Alexander J; Bojang, Abdoulie; Camara, Bully; Jallow, Edrissa; Senghore, Elina; Oluwalana, Claire; Bah, Saikou Y; Turner, Claire E; Sesay, Abdul Karim; +4 more... D'Alessandro, Umberto; Bottomley, Christian; de Silva, Thushan I; Roca, Anna; (2022) Impact of intra-partum azithromycin on carriage of group A streptococcus in the Gambia: a posthoc analysis of a double-blind randomized placebo-controlled trial. BMC infectious diseases, 22 (1). 103-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-022-07080-4

Keeley, Alexander J; Carducci, Martina; Massai, Luisa; Pizza, Mariagrazia; de Silva, Thushan I; G Moriel, Danilo; Rossi, Omar; (2022) Development and Characterisation of a Four-Plex Assay to Measure Streptococcus pyogenes Antigen-Specific IgG in Human Sera. Methods and Protocols, 5 (4). p. 55. ISSN 2409-9279 DOI: https://doi.org/10.3390/mps5040055

Lindsey, Benjamin B; Villabona-Arenas, Ch Julián; Campbell, Finlay; Keeley, Alexander J; Parker, Matthew D; Shah, Dhruv R; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta; +18 more... Foulkes, Benjamin H; Wolverson, Paige; Louka, Stavroula F; Christou, Stella; State, Amy; Johnson, Katie; Raza, Mohammad; Hsu, Sharon; Jombart, Thibaut; Cori, Anne; Sheffield COVID-19 Genomics Group; COVID-19 Genomics UK (COG-UK) consortium; CMMID COVID-19 working group; Evans, Cariad M; Partridge, David G; Atkins, Katherine E; Hué, Stéphane; de Silva, Thushan I; (2022) Characterising within-hospitalSARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves. Nature communications, 13 (1). 671-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-022-28291-y

Parker, Matthew D; Stewart, Hazel; Shehata, Ola M; Lindsey, Benjamin B; Shah, Dhruv R; Hsu, Sharon; Keeley, Alexander J; Partridge, David G; Leary, Shay; Cope, Alison; +29 more... State, Amy; Johnson, Katie; Ali, Nasar; Raghei, Rasha; Heffer, Joe; Smith, Nikki; Zhang, Peijun; Gallis, Marta; Louka, Stavroula F; Hornsby, Hailey R; Alamri, Hatoon; Whiteley, Max; Foulkes, Benjamin H; Christou, Stella; Wolverson, Paige; Pohare, Manoj; Hansford, Samantha E; Green, Luke R; Evans, Cariad; Raza, Mohammad; Wang, Dennis; Firth, Andrew E; Edgar, James R; Gaudieri, Silvana; Mallal, Simon; COVID-19 Genomics UK (COG-UK) consortium; Collins, Mark O; Peden, Andrew A; de Silva, Thushan I; (2022) Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections. Communications biology, 5 (1). 666-. ISSN 2399-3642 DOI: https://doi.org/10.1038/s42003-022-03565-9

Keeley, Alexander James; Nsutebu, Emmanuel; (2021) Improving sepsis care in Africa: an opportunity for change? The Pan African medical journal, 40. 204-. ISSN 1937-8688 DOI: https://doi.org/10.11604/pamj.2021.40.204.30127

Leary, Shay; Gaudieri, Silvana; Parker, Matthew D; Chopra, Abha; James, Ian; Pakala, Suman; Alves, Eric; John, Mina; Lindsey, Benjamin B; Keeley, Alexander J; +11 more... Rowland-Jones, Sarah L; Swanson, Maurice S; Ostrov, David A; Bubenik, Jodi L; Das, Suman R; Sidney, John; Sette, Alessandro; COVID-19 Genomics UK (COG-UK) consortium; de Silva, Thushan I; Phillips, Elizabeth; Mallal, Simon; COVID-19 Genomics UK (COG-UK) consortium; (2021) Generation of a Novel SARS-CoV-2 Sub-genomic RNA Due to the R203K/G204R Variant in Nucleocapsid: Homologous Recombination has Potential to Change SARS-CoV-2 at Both Protein and RNA Level. Pathogens & immunity, 6 (2). pp. 27-49. ISSN 2469-2964 DOI: https://doi.org/10.20411/pai.v6i2.460

Parker, Matthew D; Lindsey, Benjamin B; Leary, Shay; Gaudieri, Silvana; Chopra, Abha; Wyles, Matthew; Angyal, Adrienn; Green, Luke R; Parsons, Paul; Tucker, Rachel M; +24 more... Brown, Rebecca; Groves, Danielle; Johnson, Katie; Carrilero, Laura; Heffer, Joe; Partridge, David G; Evans, Cariad; Raza, Mohammad; Keeley, Alexander J; Smith, Nikki; Filipe, Ana Da Silva; Shepherd, James G; Davis, Chris; Bennett, Sahan; Sreenu, Vattipally B; Kohl, Alain; Aranday-Cortes, Elihu; Tong, Lily; Nichols, Jenna; Thomson, Emma C; COVID-19 Genomics UK (COG-UK) Consortium; Wang, Dennis; Mallal, Simon; de Silva, Thushan I; COVID-19 Genomics UK (COG-UK) Consortium; (2021) Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data. Genome research, 31 (4). pp. 645-658. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.268110.120

Stirrup, Oliver; Hughes, Joseph; Parker, Matthew; Partridge, David G; Shepherd, James G; Blackstone, James; Coll, Francesc; Keeley, Alexander; Lindsey, Benjamin B; Marek, Aleksandra; +7 more... Peters, Christine; Singer, Joshua B; COVID-19 Genomics UK (COG-UK) consortium; Tamuri, Asif; de Silva, Thushan I; Thomson, Emma C; Breuer, Judith; COVID-19 Genomics UK (COG-UK) consortium; (2021) Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data. eLife, 10. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.65828

Underwood, Jonathan; Cresswell, Fiona; Salam, Alex P; Keeley, Alex J; Cleland, Charles; John, Laurence; Davidson, Robert N; (2017) Complications of miliary tuberculosis: low mortality and predictive biomarkers from a UK cohort. BMC infectious diseases, 17 (1). 295-. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-017-2397-6