Items where Author or Contributor is "Thompson, J"

Number of items: 43.
2024
Dodd, Matthew;
Carpenter, James;
Thompson, Jennifer A;
Williamson, Elizabeth;
Fielding, Katherine;
Elbourne, Diana;
(2024)
Assessing efficacy in non-inferiority trials with non-adherence to interventions: Are intention-to-treat and per-protocol analyses fit for purpose?
Statistics in medicine, 43 (12).
pp. 2314-2331.
ISSN 0277-6715
DOI: https://doi.org/10.1002/sim.10067
2023
Thompson, Jennifer A;
Leurent, Baptiste;
Nash, Stephen;
Moulton, Lawrence H;
Hayes, Richard J;
(2023)
Cluster randomized controlled trial analysis at the cluster level: The clan command.
The Stata journal, 23 (3).
pp. 754-773.
ISSN 1536-867X
DOI: https://doi.org/10.1177/1536867X231196294
2022
Dodd, Matthew;
Fielding, Katherine;
Carpenter, James R;
Thompson, Jennifer A;
Elbourne, Diana;
(2022)
Statistical methods for non-adherence in non-inferiority trials: useful and used? A systematic review.
BMJ open, 12 (1).
e052656-.
ISSN 2044-6055
DOI: https://doi.org/10.1136/bmjopen-2021-052656
Jarvis, Christopher I;
Gimma, Amy;
Finger, Flavio;
Morris, Tim P;
Thompson, Jennifer A;
le Polain de Waroux, Olivier;
Edmunds, W John;
Funk, Sebastian;
Jombart, Thibaut;
(2022)
Measuring the unknown: An estimator and simulation study for assessing case reporting during epidemics.
PLoS Computational Biology, 18 (5).
e1008800-.
ISSN 1553-734X
DOI: https://doi.org/10.1371/journal.pcbi.1008800
Stagg, Helen R;
Thompson, Jennifer A;
Lipman, Marc CI;
Sloan, Derek J;
Flook, Mary;
Fielding, Katherine L;
(2022)
Forgiveness Is the Attribute of the Strong: Nonadherence and Regimen Shortening in Drug-sensitive Tuberculosis.
American journal of respiratory and critical care medicine, 207 (2).
pp. 193-205.
ISSN 1073-449X
DOI: https://doi.org/10.1164/rccm.202201-0144OC
Thompson, Jennifer A;
Leyrat, Clemence;
Fielding, Katherine L;
Hayes, Richard J;
(2022)
Cluster randomised trials with a binary outcome and a small number of clusters: comparison of individual and cluster level analysis method.
BMC Medical Research Methodology, 22 (1).
222-.
ISSN 1471-2288
DOI: https://doi.org/10.1186/s12874-022-01699-2
2021
Easter, Christina;
Thompson, Jennifer A;
Eldridge, Sandra;
Taljaard, Monica;
Hemming, Karla;
(2021)
Cluster randomized trials of individual-level interventions were at high risk of bias.
Journal of clinical epidemiology, 138.
pp. 49-59.
ISSN 0895-4356
DOI: https://doi.org/10.1016/j.jclinepi.2021.06.021
Korevaar, Elizabeth;
Kasza, Jessica;
Taljaard, Monica;
Hemming, Karla;
Haines, Terry;
Turner, Elizabeth L;
Thompson, Jennifer A;
Hughes, James P;
Forbes, Andrew B;
(2021)
Intra-cluster correlations from the CLustered OUtcome Dataset bank to inform the design of longitudinal cluster trials.
Clinical trials (London, England), 18 (5).
pp. 529-540.
ISSN 1740-7745
DOI: https://doi.org/10.1177/17407745211020852
Thompson, Jennifer A;
Francis, Suzanna C;
(2021)
Better Evidence for Programmatic Approaches to Routine Syphilis Testing Among Men Living With Human Immunodeficiency Virus: Does a Stepped Wedge Trial Provide the Answer?
Clinical Infectious Diseases, 74 (5).
pp. 854-856.
ISSN 1058-4838
DOI: https://doi.org/10.1093/cid/ciab585
2020
Thompson, JA;
Hemming, K;
Forbes, A;
Fielding, K;
Hayes, R;
(2020)
Comparison of small-sample standard-error corrections for generalised estimating equations in stepped wedge cluster randomised trials with a binary outcome: A simulation study.
Statistical Methods in Medical Research, 30 (2).
pp. 425-439.
ISSN 0962-2802
DOI: https://doi.org/10.1177/0962280220958735
2019
Hemming, Karla;
Carroll, Kelly;
Thompson, Jennifer;
Forbes, Andrew;
Taljaard, Monica;
SW-CRT Review Group;
(2019)
Quality of stepped-wedge trial reporting can be reliably assessed using an updated CONSORT: crowd-sourcing systematic review.
Journal of Clinical Epidemiology, 107.
pp. 77-88.
ISSN 0895-4356
DOI: https://doi.org/10.1016/j.jclinepi.2018.11.017
Shi, Yuan;
Thompson, Jennifer;
Walker, A Sarah;
Paton, Nicholas I;
Cheung, Yin Bun;
EARNEST Trial Team;
(2019)
Mapping the medical outcomes study HIV health survey (MOS-HIV) to the EuroQoL 5 Dimension (EQ-5D-3 L) utility index.
HEALTH AND QUALITY OF LIFE OUTCOMES, 17 (1).
83-.
ISSN 1477-7525
DOI: https://doi.org/10.1186/s12955-019-1135-8
Thompson, Jennifer;
Davey, Calum;
Hayes, Richard;
Hargreaves, James;
Fielding, Katherine;
(2019)
swpermute: Permutation tests for Stepped-Wedge Cluster-Randomised Trials.
The Stata Journal, 19 (4).
pp. 803-819.
ISSN 1097-8879
DOI: https://doi.org/10.1177/1536867X19893624
2018
Hakim, James G;
Thompson, Jennifer;
Kityo, Cissy;
Hoppe, Anne;
Kambugu, Andrew;
van Oosterhout, Joep J;
Lugemwa, Abbas;
Siika, Abraham;
Mwebaze, Raymond;
Mweemba, Aggrey;
+7 more...
Abongomera, George;
Thomason, Margaret J;
Easterbrook, Philippa;
Mugyenyi, Peter;
Walker, A Sarah;
Paton, Nicholas I;
Europe Africa Research Network for Evaluation of Second-line The;
(2018)
Lopinavir plus nucleoside reverse-transcriptase inhibitors, lopinavir plus raltegravir, or lopinavir monotherapy for second-line treatment of HIV (EARNEST): 144-week follow-up results from a randomised controlled trial.
The Lancet. Infectious diseases, 18 (1).
pp. 47-57.
ISSN 1473-3099
DOI: https://doi.org/10.1016/S1473-3099(17)30630-8
Hemming, Karla;
Taljaard, Monica;
McKenzie, Joanne E;
Hooper, Richard;
Copas, Andrew;
Thompson, Jennifer A;
Dixon-Woods, Mary;
Aldcroft, Adrian;
Doussau, Adelaide;
Grayling, Michael;
+10 more...
Kristunas, Caroline;
Goldstein, Cory E;
Campbell, Marion K;
Girling, Alan;
Eldridge, Sandra;
Campbell, Mike J;
Lilford, Richard J;
Weijer, Charles;
Forbes, Andrew B;
Grimshaw, Jeremy M;
(2018)
Reporting of stepped wedge cluster randomised trials: extension of the CONSORT 2010 statement with explanation and elaboration.
BMJ (Clinical research ed), 363.
k1614-.
ISSN 0959-8138
DOI: https://doi.org/10.1136/bmj.k1614
Thompson, JA;
Davey, C;
Fielding, K;
Hargreaves, JR;
Hayes, RJ;
(2018)
Robust analysis of stepped wedge trials using cluster-level summaries within periods.
Statistics in medicine, 37 (16).
pp. 2487-2500.
ISSN 0277-6715
DOI: https://doi.org/10.1002/sim.7668
Thompson, Jennifer A;
Kityo, Cissy;
Dunn, David;
Hoppe, Anne;
Ndashimye, Emmanuel;
Hakim, James;
Kambugu, Andrew;
van Oosterhout, Joep J;
Arribas, Jose;
Mugyenyi, Peter;
+3 more...
Walker, A Sarah;
Paton, Nicholas I;
Europe–Africa Research Network for Evaluation of Second-line The;
(2018)
Evolution of Protease Inhibitor Resistance in Human Immunodeficiency Virus Type 1 Infected Patients Failing Protease Inhibitor Monotherapy as Second-line Therapy in Low-income Countries: An Observational Analysis Within the EARNEST Randomized Trial.
Clinical infectious diseases, 68 (7).
pp. 1184-1192.
ISSN 1058-4838
DOI: https://doi.org/10.1093/cid/ciy589
2017
Fearon, Elizabeth;
Chabata, Sungai T;
Thompson, Jennifer A;
Cowan, Frances M;
Hargreaves, James R;
(2017)
Sample Size Calculations for Population Size Estimation Studies Using Multiplier Methods With Respondent-Driven Sampling Surveys.
JMIR public health and surveillance, 3 (3).
e59-.
ISSN 2369-2960
DOI: https://doi.org/10.2196/publichealth.7909
Hoppe, Anne;
Giuliano, Marina;
Lugemwa, Abbas;
Thompson, Jennifer A;
Floridia, Marco;
Walker, Ann S;
Senoga, Ismail;
Abwola, Mary C;
Pirillo, Maria F;
Kityo, Cissy M;
+3 more...
Arenas-Pinto, Alejandro;
Paton, Nicholas I;
EARNEST Trial Team;
(2017)
HIV-1 viral load and resistance in genital secretions in patients taking protease-inhibitor-based second-line therapy in Africa.
Antiviral therapy, 23 (2).
pp. 191-195.
ISSN 1359-6535
DOI: https://doi.org/10.3851/IMP3200
Kityo, Cissy;
Thompson, Jennifer;
Nankya, Immaculate;
Hoppe, Anne;
Ndashimye, Emmanuel;
Warambwa, Colin;
Mambule, Ivan;
van Oosterhout, Joep J;
Wools-Kaloustian, Kara;
Bertagnolio, Silvia;
+5 more...
Easterbrook, Philippa J;
Mugyenyi, Peter;
Walker, A Sarah;
Paton, Nicholas I;
Europe Africa Research Network for Evaluation of Second-line The;
(2017)
HIV Drug Resistance Mutations in Non-B Subtypes After Prolonged Virological Failure on NNRTI-Based First-Line Regimens in Sub-Saharan Africa.
Journal of acquired immune deficiency syndromes (1999), 75 (2).
e45-e54.
ISSN 1525-4135
DOI: https://doi.org/10.1097/QAI.0000000000001285
Paton, Nicholas I;
Kityo, Cissy;
Thompson, Jennifer;
Nankya, Immaculate;
Bagenda, Leonard;
Hoppe, Anne;
Hakim, James;
Kambugu, Andrew;
van Oosterhout, Joep J;
Kiconco, Mary;
+5 more...
Bertagnolio, Silvia;
Easterbrook, Philippa J;
Mugyenyi, Peter;
Walker, A Sarah;
Europe Africa Research Network for Evaluation of Second-line The;
(2017)
Nucleoside reverse-transcriptase inhibitor cross-resistance and outcomes from second-line antiretroviral therapy in the public health approach: an observational analysis within the randomised, open-label, EARNEST trial.
The lancet HIV, 4 (8).
e341-e348.
ISSN 2405-4704
DOI: https://doi.org/10.1016/S2352-3018(17)30065-6
Thompson, JA;
Fielding, K;
Hargreaves, J;
Copas, A;
(2017)
The optimal design of the stepped wedge trial and a comparison to other trial designs.
[Conference or Workshop Item]
https://doi.org/10.1186/s13063-017-1902-y
Full text not available from this repository.
Thompson, Jennifer A;
Fielding, Katherine L;
Davey, Calum;
Aiken, Alexander M;
Hargreaves, James R;
Hayes, Richard J;
(2017)
Bias and inference from misspecified mixed-effect models in stepped wedge trial analysis.
Statistics in medicine, 36 (23).
pp. 3670-3682.
ISSN 0277-6715
DOI: https://doi.org/10.1002/sim.7348
Thompson, Jennifer A;
Fielding, Katherine;
Hargreaves, James;
Copas, Andrew;
(2017)
The optimal design of stepped wedge trials with equal allocation to sequences and a comparison to other trial designs.
Clinical trials (London, England), 14 (6).
pp. 639-647.
ISSN 1740-7745
DOI: https://doi.org/10.1177/1740774517723921
2016
Kambugu, Andrew;
Thompson, Jennifer;
Hakim, James;
Tumukunde, Dinah;
van Oosterhout, Joep J;
Mwebaze, Raymond;
Hoppe, Anne;
Abach, James;
Kwobah, Charles;
Arenas-Pinto, Alejandro;
+3 more...
Walker, Sarah A;
Paton, Nicholas I;
EARNEST Trial Team;
(2016)
Neurocognitive Function at the First-Line Failure and on the Second-Line Antiretroviral Therapy in Africa: Analyses From the EARNEST Trial.
Journal of acquired immune deficiency syndromes (1999), 71 (5).
pp. 506-513.
ISSN 1525-4135
DOI: https://doi.org/10.1097/QAI.0000000000000898
Thompson, JA;
Davey, C;
Fielding, K;
Hargreaves, J;
Hayes, RJ;
(2016)
A reanalysis of the Brazil XpertMTB/RIF stepped wedge trial using a novel cluster summary analysis method.
[Conference or Workshop Item]
https://researchonline.lshtm.ac.uk/id/eprint/4646727
Full text not available from this repository.
Thompson, JA;
Fielding, KL;
Davey, C;
Aiken, AM;
Hargreaves, JR;
Hayes, RJ;
(2016)
Implications of Misspecifed Mixed Effect Models in Stepped Wedge Trial Analysis: How Wrong Can It Be?
[Conference or Workshop Item]
https://doi.org/10.1186/s13063-016-1436-8
Full text not available from this repository.
Thompson, JA;
Kityo, C;
Walker, AS;
Hakim, J;
van Oosterhout, JJ;
Siika, A;
Mweemba, A;
van Den Eede, P;
Dunn, DT;
Paton, N;
+1 more...
, ForTheEarnestTrialTeam;
(2016)
Effect of PI Resistance Mutations on Viral Load in Patients on PI Monotherapy.
[Conference or Workshop Item]
https://researchonline.lshtm.ac.uk/id/eprint/4646744
Full text not available from this repository.
2015
Arenas-Pinto, A;
Thompson, J;
Musoro, G;
Musana, H;
Lugemwa, A;
Kambugu, A;
Mweemba, A;
Walker, AS;
Paton, N;
Team., FTET;
(2015)
Peripheral neuropathy at first-line failure and on second-line in sub-Saharan Africa.
[Conference or Workshop Item]
https://researchonline.lshtm.ac.uk/id/eprint/4646753
Full text not available from this repository.
Arenas-Pinto, Alejandro;
Thompson, Jennifer;
Musoro, Godfrey;
Musana, Hellen;
Lugemwa, Abbas;
Kambugu, Andrew;
Mweemba, Aggrey;
Atwongyeire, Dickens;
Thomason, Margaret J;
Walker, A Sarah;
+2 more...
Paton, Nicholas I;
EARNEST Trial Team;
(2015)
Peripheral neuropathy in HIV patients in sub-Saharan Africa failing first-line therapy and the response to second-line ART in the EARNEST trial.
Journal of neurovirology, 22 (1).
pp. 104-113.
ISSN 1355-0284
DOI: https://doi.org/10.1007/s13365-015-0374-7
Full text not available from this repository.
Beard, Emma;
Lewis, James J;
Copas, Andrew;
Davey, Calum;
Osrin, David;
Baio, Gianluca;
Thompson, Jennifer A;
Fielding, Katherine L;
Omar, Rumana Z;
Ononge, Sam;
+2 more...
Hargreaves, James;
Prost, Audrey;
(2015)
Stepped wedge randomised controlled trials: systematic review of studies published between 2010 and 2014.
Trials, 16 (1).
353-.
ISSN 1745-6215
DOI: https://doi.org/10.1186/s13063-015-0839-2
Copas, Andrew J;
Lewis, James J;
Thompson, Jennifer A;
Davey, Calum;
Baio, Gianluca;
Hargreaves, James R;
(2015)
Designing a stepped wedge trial: three main designs, carry-over effects and randomisation approaches.
Trials, 16 (1).
352-.
ISSN 1745-6215
DOI: https://doi.org/10.1186/s13063-015-0842-7
Davey, C;
Thompson, JA;
(2015)
Assessing sensitivity to assumptions in mixed effects analyses of stepped-wedge trials.
[Conference or Workshop Item]
https://doi.org/10.1186/1745-6215-16-s2-o46
Full text not available from this repository.
Davey, Calum;
Hargreaves, James;
Thompson, Jennifer A;
Copas, Andrew J;
Beard, Emma;
Lewis, James J;
Fielding, Katherine L;
(2015)
Analysis and reporting of stepped wedge randomised controlled trials: synthesis and critical appraisal of published studies, 2010 to 2014.
Trials, 16 (1).
358-.
ISSN 1745-6215
DOI: https://doi.org/10.1186/s13063-015-0838-3
Hakim, J;
Thompson, J;
Kityo, C;
Walker, AS;
van Oosterhout, JJ;
Hoppe, A;
Kambugu, A;
Mugyenyi, P;
Paton, N;
Team., FTET;
(2015)
Second-line treatment in sub-Saharan Africa: week 144 follow-up of the EARNEST trial.
[Conference or Workshop Item]
https://researchonline.lshtm.ac.uk/id/eprint/4646749
Full text not available from this repository.
Hargreaves, James R;
Copas, Andrew J;
Beard, Emma;
Osrin, David;
Lewis, James J;
Davey, Calum;
Thompson, Jennifer A;
Baio, Gianluca;
Fielding, Katherine L;
Prost, Audrey;
(2015)
Five questions to consider before conducting a stepped wedge trial.
Trials, 16 (1).
350-.
ISSN 1745-6215
DOI: https://doi.org/10.1186/s13063-015-0841-8
Kambugu, A;
Thompson, J;
Hakim, J;
Tumukunde, D;
van Oosterhout, JJ;
Hoppe, A;
Kwobah, C;
Walker, AS;
Paton, N;
Team., FTET;
(2015)
Neurocognitive function in patients failing first-line ART in Africa and responses to second-line.
[Conference or Workshop Item]
https://researchonline.lshtm.ac.uk/id/eprint/4646732
Full text not available from this repository.
Kityo, C;
Walker, AS;
Nankya, I;
Hoppe, A;
Thompson, J;
Bertagnolio, S;
Easterbrook, PJ;
Mugyenyi, P;
Paton, N;
Team., FTET;
(2015)
Differences in Resistance Mutations in Non-B Subtypes at First-line Failure in Africa.
[Conference or Workshop Item]
https://researchonline.lshtm.ac.uk/id/eprint/4646748
Full text not available from this repository.
Paton, N;
Thompson, J;
Bagenda, L;
Hakim, J;
van Oosterhout, JJ;
Kambugu, A;
Hoppe, A;
Walker, AS;
Team., FTET;
(2015)
Impact of NRTI Cross-Resistance on Second-line PI + NRTI Therapy Outcomes in Africa.
[Conference or Workshop Item]
https://researchonline.lshtm.ac.uk/id/eprint/4646743
Full text not available from this repository.
Thompson, J;
Fielding, K;
Hargreaves, J;
Copas, A;
(2015)
Considering the design effect for the stepped wedge trial: what can it tell us?
[Conference or Workshop Item]
https://doi.org/10.1186/1745-6215-16-s2-o45
Full text not available from this repository.
2014
Jairath, Vipul;
Thompson, J;
Kahan, BC;
Daniel, R;
Hearnshaw, SA;
Travis, SPL;
Murphy, MF;
Palmer, KR;
Logan, RFA;
(2014)
Poor outcomes in hospitalized patients with gastrointestinal bleeding: impact of baseline risk, bleeding severity, and process of care.
The American journal of gastroenterology, 109 (10).
pp. 1603-1612.
ISSN 0002-9270
DOI: https://doi.org/10.1038/ajg.2014.263
Full text not available from this repository.
Olupot-Olupot, Peter;
Engoru, Charles;
Thompson, Jennifer;
Nteziyaremye, Julius;
Chebet, Martin;
Ssenyondo, Tonny;
Dambisya, Cornelius M;
Okuuny, Vicent;
Wokulira, Ronald;
Amorut, Denis;
+8 more...
Ongodia, Paul;
Mpoya, Ayub;
Williams, Thomas N;
Uyoga, Sophie;
Macharia, Alex;
Gibb, Diana M;
Walker, A Sarah;
Maitland, Kathryn;
(2014)
Phase II trial of standard versus increased transfusion volume in Ugandan children with acute severe anemia.
BMC medicine, 12 (1).
67-.
ISSN 1741-7015
DOI: https://doi.org/10.1186/1741-7015-12-67
Paton, Nicholas I;
Kityo, Cissy;
Hoppe, Anne;
Reid, Andrew;
Kambugu, Andrew;
Lugemwa, Abbas;
van Oosterhout, Joep J;
Kiconco, Mary;
Siika, Abraham;
Mwebaze, Raymond;
+17 more...
Abwola, Mary;
Abongomera, George;
Mweemba, Aggrey;
Alima, Hillary;
Atwongyeire, Dickens;
Nyirenda, Rose;
Boles, Justine;
Thompson, Jennifer;
Tumukunde, Dinah;
Chidziva, Ennie;
Mambule, Ivan;
Arribas, Jose R;
Easterbrook, Philippa J;
Hakim, James;
Walker, A Sarah;
Mugyenyi, Peter;
EARNEST Trial Team;
(2014)
Assessment of second-line antiretroviral regimens for HIV therapy in Africa.
The New England journal of medicine, 371 (3).
pp. 234-247.
ISSN 0028-4793
DOI: https://doi.org/10.1056/NEJMoa1311274