Year Item Type Full Text

Article

Vaccination strategies against wild poliomyelitis in polio-free settings: outbreak risk modelling study and cost-effectiveness analysis. (2025) Auzenbergs, Megan; Abbas, Kaja; Peak, Corey M; Voorman, Arend; Jit, Mark; O'Reilly, Kathleen M picture_as_pdf

Desirable BUGS in models of infectious diseases. (2019) Auzenbergs, Megan; Correia-Gomes, Carla; Economou, Theo; Lowe, Rachel; O'Reilly, Kathleen M

The impact of surveillance and other factors on detection of emergent and circulating vaccine derived polioviruses. (2021) Auzenbergs, Megan; Fountain, Holly; Macklin, Grace; Lyons, Hil; O'Reilly, Kathleen M

Tooling-up for infectious disease transmission modelling. (2020) Baguelin, Marc; Medley, Graham F; Nightingale, Emily S; O'Reilly, Kathleen M; Rees, Eleanor M; Waterlow, Naomi R; Wagner, Moritz

The cost-effectiveness of controlling dengue in Indonesia using wMel Wolbachia released at scale: a modelling study. (2020) Brady, Oliver J; Kharisma, Dinar D; Wilastonegoro, Nandyan N; O'Reilly, Kathleen M; Hendrickx, Emilie; Bastos, Leonardo S; Yakob, Laith; Shepard, Donald S

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation. (2015) De Maio, Nicola; Wu, Chieh-Hsi; O'Reilly, Kathleen M; Wilson, Daniel

Estimating the minimum number of SARS-CoV-2 infected cases needed to detect viral RNA in wastewater: To what extent of the outbreak can surveillance of wastewater tell us? (2021) Hong, Pei-Ying; Rachmadi, Andri Taruna; Mantilla-Calderon, David; Alkahtani, Mohsen; Bashawri, Yasir M; Al Qarni, Hamed; O'Reilly, Kathleen M; Zhou, Jianqiang

Routine immunization in Pakistan: comparison of multiple data sources and identification of factors associated with vaccination. (2018) Imran, Hafsa; Raja, Dania; Grassly, Nicholas C; Wadood, M Zubair; Safdar, Rana M; O'Reilly, Kathleen M

Immune Imprinting Drives Human Norovirus Potential for Global Spread. (2022) Lindesmith, Lisa C; Boshier, Florencia AT; Brewer-Jensen, Paul D; Roy, Sunando; Costantini, Veronica; Mallory, Michael L; Zweigart, Mark; May, Samantha R; Conrad, Helen; O'Reilly, Kathleen M; Kelly, Daniel; Celma, Cristina C; Beard, Stuart; Williams, Rachel; Tutill, Helena J; Becker Dreps, Sylvia; Bucardo, Filemón; Allen, David J; Vinjé, Jan; Goldstein, Richard A; Breuer, Judith; Baric, Ralph S

Emergent variant modeling of the serological repertoire to norovirus in young children. (2023) Lindesmith, Lisa C; Brewer-Jensen, Paul D; Conrad, Helen; O'Reilly, Kathleen M; Mallory, Michael L; Kelly, Daniel; Williams, Rachel; Edmunds, W John; Allen, David J; Breuer, Judith; Baric, Ralph S

Combined effects of hydrometeorological hazards and urbanisation on dengue risk in Brazil: a spatiotemporal modelling study. (2021) Lowe, Rachel; Lee, Sophie A; O'Reilly, Kathleen M; Brady, Oliver J; Bastos, Leonardo; Carrasco-Escobar, Gabriel; de Castro Catão, Rafael; Colón-González, Felipe J; Barcellos, Christovam; Carvalho, Marilia Sá; Blangiardo, Marta; Rue, Håvard; Gasparrini, Antonio

Evolving epidemiology of poliovirus serotype 2 following withdrawal of the serotype 2 oral poliovirus vaccine. (2020) Macklin, GR; O'Reilly, KM; Grassly, NC; Edmunds, WJ; Mach, O; Santhana Gopala Krishnan, R; Voorman, A; Vertefeuille, JF; Abdelwahab, J; Gumede, N; Goel, A; Sosler, S; Sever, J; Bandyopadhyay, AS; Pallansch, MA; Nandy, R; Mkanda, P; Diop, OM; Sutter, RW

Epidemiology of type 2 vaccine-derived poliovirus outbreaks between 2016 and 2020. (2022) Macklin, Grace R; Goel, Ajay K; Mach, Ondrej; Tallis, Graham; Ahmed, Jamal A; O'Reilly, Kathleen M; Grassly, Nicholas C; Diop, Ousmane M

Vaccine schedules and the effect on humoral and intestinal immunity against poliovirus: a systematic review and network meta-analysis. (2019) Macklin, Grace R; Grassly, Nicholas C; Sutter, Roland W; Mach, Ondrej; Bandyopadhyay, Ananda S; Edmunds, W John; O'Reilly, Kathleen M

A serological investigation of caseous lymphadenitis in four flocks of sheep. (2006) Malone, Frank E; Fee, Seán A; Kamp, Elbarte M; King, David C; Baird, Graham J; O'Reilly, Kath M; Murdock, Fiona Ea

Wastewater surveillance overcomes socio-economic limitations of laboratory-based surveillance when monitoring disease transmission: The South African experience during the COVID-19 pandemic. (2025) Maree, Gillian; Els, Fiona; Naidoo, Yashena; Naidoo, Laven; Mahamuza, Phemelo; Macheke, Mokgaetji; Ndlovu, Nkosenhle; Rachida, Said; Iwu-Jaja, Chinwe; Taukobong, Setshaba; Maposa, Sibonginkosi; O'Reilly, Kathleen; Yousif, Mukhlid; McCarthy, Kerrigan picture_as_pdf

Transport networks and inequities in vaccination: remoteness shapes measles vaccine coverage and prospects for elimination across Africa. (2014) Metcalf, CJE; Tatem, A; Bjornstad, ON; Lessler, J; O'Reilly, K; Takahashi, S; Cutts, F; Grenfell, BT

Risk factors and short-term projections for serotype-1 poliomyelitis incidence in Pakistan: A spatiotemporal analysis. (2017) Molodecky, Natalie A; Blake, Isobel M; O'Reilly, Kathleen M; Wadood, Mufti Zubair; Safdar, Rana M; Wesolowski, Amy; Buckee, Caroline O; Bandyopadhyay, Ananda S; Okayasu, Hiromasa; Grassly, Nicholas C

Stakeholder Interviews to Inform Best Practice for Public Facing COVID-19 Wastewater Dashboards [version 2; peer review: 2 approved with reservations]. (2025) Morales, Daniela; Rhodes, Tim; O'Reilly, Kathleen M

An analysis of 45 large-scale wastewater sites in England to estimate SARS-CoV-2 community prevalence. (2022) Morvan, Mario; Jacomo, Anna Lo; Souque, Celia; Wade, Matthew J; Hoffmann, Till; Pouwels, Koen; Lilley, Chris; Singer, Andrew C; Porter, Jonathan; Evens, Nicholas P; Walker, David I; Bunce, Joshua T; Engeli, Andrew; Grimsley, Jasmine; O'Reilly, Kathleen M; Danon, Leon

The association of COVID-19 incidence with temperature, humidity, and UV radiation - A global multi-city analysis. (2022) Nottmeyer, Luise; Armstrong, Ben; Lowe, Rachel; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen M; von Borries, Rosa; Schneider, Rochelle; Royé, Dominic; Hashizume, Masahiro; Pascal, Mathilde; Tobias, Aurelio; Vicedo-Cabrera, Ana Maria; Lavigne, Eric; Correa, Patricia Matus; Ortega, Nicolás Valdés; Kynčl, Jan; Urban, Aleš; Orru, Hans; Ryti, Niilo; Jaakkola, Jouni; Dallavalle, Marco; Schneider, Alexandra; Honda, Yasushi; Ng, Chris Fook Sheng; Alahmad, Barrak; Carrasco-Escobar, Gabriel; Holobâc, Iulian Horia; Kim, Ho; Lee, Whanhee; Íñiguez, Carmen; Bell, Michelle L; Zanobetti, Antonella; Schwartz, Joel; Scovronick, Noah; Coélho, Micheline de Sousa Zanotti Stagliorio; Saldiva, Paulo Hilario Nascimento; Diaz, Magali Hurtado; Gasparrini, Antonio; Sera, Francesco

A New Method for Estimating the Coverage of Mass Vaccination Campaigns Against Poliomyelitis From Surveillance Data. (2015) O'Reilly, KM; Cori, A; Durry, E; Wadood, MZ; Bosan, A; Aylward, RB; Grassly, NC

Surveillance optimisation to detect poliovirus in the pre-eradication era: a modelling study of England and Wales. (2020) O'Reilly, KM; Grassly, NC; Allen, DJ; Bannister-Tyrrell, M; Cameron, A; Carrion Martin, AI; Ramsay, M; Pebody, R; Zambon, M

Parameter estimation and simulations of a mathematical model of Corynebacterium pseudotuberculosis transmission in sheep. (2007) O'Reilly, KM; Green, LE; Malone, FE; Medley, GF

Investigation of risk factors for clinical mastitis in British dairy herds with bulk milk somatic cell counts less than 150,000 cells/ml. (2006) O'Reilly, KM; Green, MJ; Peeler, EJ; Fitzpatrick, JL; Green, LE

Factors associated with preweaning mortality on commercial pig farms in England and Wales. (2006) O'Reilly, KM; Harris, MJ; Mendl, M; Held, S; Moinard, C; Statham, P; Marchant-Forde, J; Green, LE

Associations between the presence of virulence determinants and the epidemiology and ecology of zoonotic Escherichia coli. (2010) O'Reilly, KM; Low, JC; Denwood, MJ; Gally, DL; Evans, J; Gunn, GJ; Mellor, DJ; Reid, SWJ; Matthews, L

Polio vaccination in Pakistan – Author's reply. (2012) O'Reilly, Kath M

Understanding commitment to polio vaccination. (2017) O'Reilly, Kathleen M

The challenges of informative wastewater sampling for SARS-CoV-2 must be met: lessons from polio eradication. (2020) O'Reilly, Kathleen M; Allen, David J; Fine, Paul; Asghar, Humayun

Effective transmission across the globe: the role of climate in COVID-19 mitigation strategies. (2020) O'Reilly, Kathleen M; Auzenbergs, Megan; Jafari, Yalda; Liu, Yang; Flasche, Stefan; Lowe, Rachel

A statistical model of the international spread of wild poliovirus in Africa used to predict and prevent outbreaks. (2011) O'Reilly, Kathleen M; Chauvin, Claire; Aylward, R Bruce; Maher, Chris; Okiror, Sam; Wolff, Chris; Nshmirimana, Deo; Donnelly, Christl A; Grassly, Nicholas C

The effect of mass immunisation campaigns and new oral poliovirus vaccines on the incidence of poliomyelitis in Pakistan and Afghanistan, 2001-11: a retrospective analysis. (2012) O'Reilly, Kathleen M; Durry, Elias; ul Islam, Obaid; Quddus, Arshad; Abid, Ni'ma; Mir, Tahir P; Tangermann, Rudi H; Aylward, R Bruce; Grassly, Nicholas C

Estimating the burden of dengue and the impact of release of wMel Wolbachia-infected mosquitoes in Indonesia: a modelling study. (2019) O'Reilly, Kathleen M; Hendrickx, Emilie; Kharisma, Dinar D; Wilastonegoro, Nandyan N; Carrington, Lauren B; Elyazar, Iqbal RF; Kucharski, Adam J; Lowe, Rachel; Flasche, Stefan; Pigott, David M; Reiner, Robert C; Edmunds, W John; Hay, Simon I; Yakob, Laith; Shepard, Donald S; Brady, Oliver J

An assessment of the geographical risks of wild and vaccine-derived poliomyelitis outbreaks in Africa and Asia. (2017) O'Reilly, Kathleen M; Lamoureux, Christine; Molodecky, Natalie A; Lyons, Hil; Grassly, Nicholas C; Tallis, Graham

Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis. (2018) O'Reilly, Kathleen M; Lowe, Rachel; Edmunds, W John; Mayaud, Philippe; Kucharski, Adam; Eggo, Rosalind M; Funk, Sebastian; Bhatia, Deepit; Khan, Kamran; Kraemer, Moritz UG; Wilder-Smith, Annelies; Rodrigues, Laura C; Brasil, Patricia; Massad, Eduardo; Jaenisch, Thomas; Cauchemez, Simon; Brady, Oliver J; Yakob, Laith

Predicted norovirus resurgence in 2021-2022 due to the relaxation of nonpharmaceutical interventions associated with COVID-19 restrictions in England: a mathematical modeling study. (2021) O'Reilly, Kathleen M; Sandman, Frank; Allen, David; Jarvis, Christopher I; Gimma, Amy; Douglas, Amy; Larkin, Lesley; Wong, Kerry LM; Baguelin, Marc; Baric, Ralph S; Lindesmith, Lisa C; Goldstein, Richard A; Breuer, Judith; Edmunds, W John

Population sensitivity of acute flaccid paralysis and environmental surveillance for serotype 1 poliovirus in Pakistan: an observational study. (2018) O'Reilly, Kathleen M; Verity, Robert; Durry, Elias; Asghar, Humayun; Sharif, Salmaan; Zaidi, Sohail Z; Wadood, M Zubair M; Diop, Ousmane M; Okayasu, Hiro; Safdar, Rana M; Grassly, Nicholas C

Using the human blood index to investigate host biting plasticity: a systematic review and meta-regression of the three major African malaria vectors. (2018) Orsborne, James; Furuya-Kanamori, Luis; Jeffries, Claire L; Kristan, Mojca; Mohammed, Abdul Rahim; Afrane, Yaw A; O'Reilly, Kathleen; Massad, Eduardo; Drakeley, Chris; Walker, Thomas; Yakob, Laith

Investigating the blood-host plasticity and dispersal of Anopheles coluzzii using a novel field-based methodology. (2019) Orsborne, James; Furuya-Kanamori, Luis; Jeffries, Claire L; Kristan, Mojca; Mohammed, Abdul Rahim; Afrane, Yaw A; O'Reilly, Kathleen; Massad, Eduardo; Drakeley, Chris; Walker, Thomas; Yakob, Laith

Impact of inactivated poliovirus vaccine on mucosal immunity: implications for the polio eradication endgame. (2015) Parker, Edward Pk; Molodecky, Natalie A; Pons-Salort, Margarita; O'Reilly, Kathleen M; Grassly, Nicholas C

Projected early spread of COVID-19 in Africa through 1 June 2020. (2020) Pearson, Carl Ab; Van Schalkwyk, Cari; Foss, Anna M; O'Reilly, Kathleen M; SACEMA Modelling and Analysis Response Team; CMMID COVID-19 working group; Pulliam, Juliet Rc

Population Immunity against Serotype-2 Poliomyelitis Leading up to the Global Withdrawal of the Oral Poliovirus Vaccine: Spatio-temporal Modelling of Surveillance Data. (2016) Pons-Salort, Margarita; Molodecky, Natalie A; O'Reilly, Kathleen M; Wadood, Mufti Zubair; Safdar, Rana M; Etsano, Andrew; Vaz, Rui Gama; Jafari, Hamid; Grassly, Nicholas C; Blake, Isobel M

Population Immunity against Serotype-2 Poliomyelitis Leading up to the Global Withdrawal of the Oral Poliovirus Vaccine: Spatio-temporal Modelling of Surveillance Data. (2016) Pons-Salort, Margarita; Molodecky, Natalie A; O'Reilly, Kathleen M; Wadood, Mufti Zubair; Safdar, Rana M; Etsano, Andrew; Vaz, Rui Gama; Jafari, Hamid; Grassly, Nicholas C; Blake, Isobel M

SARS-CoV-2 infection risk during delivery of childhood vaccination campaigns: a modelling study. (2021) Procter, Simon R; Abbas, Kaja; Flasche, Stefan; Griffiths, Ulla; Hagedorn, Brittany; O'Reilly, Kathleen M; CMMID COVID-19 Working Group; Jit, Mark

A cross-sectional analysis of meteorological factors and SARS-CoV-2 transmission in 409 cities across 26 countries. (2021) Sera, Francesco; Armstrong, Ben; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen; von Borries, Rosa; Schneider, Rochelle; Royé, Dominic; Hashizume, Masahiro; Pascal, Mathilde; Tobias, Aurelio; Vicedo-Cabrera, Ana Maria; MCC Collaborative Research Network; CMMID COVID-19 Working Group; Gasparrini, Antonio; Lowe, Rachel

Defining a research agenda for environmental wastewater surveillance of pathogens. (2023) Shaw, Alexander G; Troman, Catherine; Akello, Joyce Odeke; O'Reilly, Kathleen M; Gauld, Jillian; Grow, Stephanie; Grassly, Nicholas; Steele, Duncan; Blazes, David; Kumar, Supriya; Environmental Surveillance Working Group

Global yellow fever vaccination coverage from 1970 to 2016: an adjusted retrospective analysis. (2017) Shearer, Freya M; Moyes, Catherine L; Pigott, David M; Brady, Oliver J; Marinho, Fatima; Deshpande, Aniruddha; Longbottom, Joshua; Browne, Annie J; Kraemer, Moritz UG; O'Reilly, Kathleen M; Hombach, Joachim; Yactayo, Sergio; de Araújo, Valdelaine EM; da Nóbrega, Aglaêr A; Mosser, Jonathan F; Stanaway, Jeffrey D; Lim, Stephen S; Hay, Simon I; Golding, Nick; Reiner, Robert C

Real-time prediction model of cVDPV2 outbreaks to aid outbreak response vaccination strategies. (2021) Voorman, Arend; O'Reilly, Kathleen; Lyons, Hil; Goel, Ajay Kumar; Touray, Kebba; Okiror, Samuel

ZikaPLAN: addressing the knowledge gaps and working towards a research preparedness network in the Americas. (2019) Wilder-Smith, Annelies; Preet, Raman; Brickley, Elizabeth B; Ximenes, Ricardo Arraes de Alencar; Miranda-Filho, Demócrito de Barros; Turchi Martelli, Celina Maria; Araújo, Thália Velho Barreto de; Montarroyos, Ulisses Ramos; Moreira, Maria Elisabeth; Turchi, Marília Dalva; Solomon, Tom; Jacobs, Bart C; Villamizar, Carlos Pardo; Osorio, Lyda; de Filipps, Ana Maria Bispo; Neyts, Johan; Kaptein, Suzanne; Huits, Ralph; Ariën, Kevin K; Willison, Hugh J; Edgar, Julia M; Barnett, Susan C; Peeling, Rosanna; Boeras, Debi; Guzman, Maria G; de Silva, Aravinda M; Falconar, Andrew K; Romero-Vivas, Claudia; Gaunt, Michael W; Sette, Alessandro; Weiskopf, Daniela; Lambrechts, Louis; Dolk, Helen; Morris, Joan K; Orioli, Ieda M; O'Reilly, Kathleen M; Yakob, Laith; Rocklöv, Joacim; Soares, Cristiane; Ferreira, Maria Lúcia Brito; Franca, Rafael Freitas de Oliveira; Precioso, Alexander R; Logan, James; Lang, Trudie; Jamieson, Nina; Massad, Eduardo

Conference or Workshop Item

Analysis of the potential drivers of seasonality in COVID-19 transmission dynamics in 409 locations across 26 countries . (2021) Lowe, Rachel; Armstrong, Ben; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen; Von Borries, Rosa; Schneider, Rochelle; Roye, Dominic; Hashizume, Masahiro; Pascal, Mathilde; Tobias, Aurelio; Vicedo-Cabrera, Ana Maria; Gasparrini, Antonio; Sera, Francesco

Potential influence of meteorological conditions on early COVID-19 transmission dynamics in 409 cities across 26 countries. (2021) Lowe, Rachel; Armstrong, Ben; Abbott, Sam; Meakin, Sophie; O'Reilly, Kathleen; von Borries, Rosa; Schneider, Rochelle; Royé, Dominic; Hashizume, Masahiro; Pascal, Mathilde; Tobias, Aurelio; Vicedo-Cabrera, Ana; Gasparrini, Antonio; Sera, Francesco

Projecting the end of the Zika epidemic in Latin America: A modelling analysis. (2018) O'Reilly, K; Brady, O; Yakob, L

Thesis

Epidemiology and vaccination strategies against type-2 vaccine -derived poliovirus. (2023) Macklin, GR

Investigating Social Contact Patterns and their Role in Transmission Dynamics during the COVID-19 Pandemic in Japan. (2025) Nakamura, T picture_as_pdf