Items where Author or Contributor is "Assefa, Samuel A"
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Number of items: 14.
Article
Assefa, Samuel A;
Preston, Mark D;
Campino, Susana;
Ocholla, Harold;
Sutherland, Colin J;
Clark, Taane G;
(2014)
estMOI: estimating multiplicity of infection using parasite deep sequencing data.
Bioinformatics (Oxford, England), 30 (9).
pp. 1292-1294.
ISSN 1367-4803
DOI: https://doi.org/10.1093/bioinformatics/btu005
Assefa, Samuel;
Lim, Caeul;
Preston, Mark D;
Duffy, Craig W;
Nair, Mridul B;
Adroub, Sabir A;
Kadir, Khamisah A;
Goldberg, Jonathan M;
Neafsey, Daniel E;
Divis, Paul;
+5 more...
Clark, Taane G;
Duraisingh, Manoj T;
Conway, David J;
Pain, Arnab;
Singh, Balbir;
(2015)
Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi.
Proceedings of the National Academy of Sciences of the United States of America, 112 (42).
pp. 13027-13032.
ISSN 0027-8424
DOI: https://doi.org/10.1073/pnas.1509534112
Ba, H;
Ahouidi, AD;
Duffy, CW;
Deh, YB;
Diedhiou, C;
Tandia, A;
Diallo, MY;
Assefa, S;
Lô, BB;
Elkory, MB;
+1 more...
Conway, DJ;
(2016)
[Evaluation of malaria rapid diagnostic test Optimal-IT® pLDH along the Plasmodium falciparum distribution limit in Mauritania].
Bulletin de la Societe de pathologie exotique (1990), 110 (1).
pp. 31-37.
ISSN 0037-9085
DOI: https://doi.org/10.1007/s13149-017-0541-y
Campino, Susana;
Benavente, Ernest Diez;
Assefa, Samuel;
Thompson, Eloise;
Drought, Laura G;
Taylor, Catherine J;
Gorvett, Zaria;
Carret, Celine K;
Flueck, Christian;
Ivens, Al C;
+4 more...
Kwiatkowski, Dominic P;
Alano, Pietro;
Baker, David A;
Clark, Taane G;
(2016)
Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines.
Malaria journal, 15 (1).
229-.
ISSN 1475-2875
DOI: https://doi.org/10.1186/s12936-016-1254-1
Claessens, Antoine;
Affara, Muna;
Assefa, Samuel A;
Kwiatkowski, Dominic P;
Conway, David J;
(2017)
Culture adaptation of malaria parasites selects for convergent loss-of-function mutants.
Scientific reports, 7 (1).
41303-.
ISSN 2045-2322
DOI: https://doi.org/10.1038/srep41303
Clark, Taane G;
Mallard, Kim;
Coll, Francesc;
Preston, Mark;
Assefa, Samuel;
Harris, David;
Ogwang, Sam;
Mumbowa, Francis;
Kirenga, Bruce;
O'Sullivan, Denise M;
+8 more...
Okwera, Alphonse;
Eisenach, Kathleen D;
Joloba, Moses;
Bentley, Stephen D;
Ellner, Jerrold J;
Parkhill, Julian;
Jones-López, Edward C;
McNerney, Ruth;
(2013)
Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing.
PloS one, 8 (12).
e83012-.
ISSN 1932-6203
DOI: https://doi.org/10.1371/journal.pone.0083012
Divis, Paul CS;
Singh, Balbir;
Anderios, Fread;
Hisam, Shamilah;
Matusop, Asmad;
Kocken, Clemens H;
Assefa, Samuel A;
Duffy, Craig W;
Conway, David J;
(2015)
Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species.
PLoS pathogens, 11 (5).
e1004888-.
ISSN 1553-7366
DOI: https://doi.org/10.1371/journal.ppat.1004888
Duffy, Craig W;
Assefa, Samuel A;
Abugri, James;
Amoako, Nicholas;
Owusu-Agyei, Seth;
Anyorigiya, Thomas;
MacInnis, Bronwyn;
Kwiatkowski, Dominic P;
Conway, David J;
Awandare, Gordon A;
(2015)
Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity.
BMC genomics, 16 (1).
527-.
ISSN 1471-2164
DOI: https://doi.org/10.1186/s12864-015-1746-3
Duffy, Craig W;
Ba, Hampate;
Assefa, Samuel;
Ahouidi, Ambroise D;
Deh, Yacine B;
Tandia, Abderahmane;
Kirsebom, Freja CM;
Kwiatkowski, Dominic P;
Conway, David J;
(2017)
Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution.
Molecular ecology, 26 (11).
pp. 2880-2894.
ISSN 0962-1083
DOI: https://doi.org/10.1111/mec.14066
Murray, Lee;
Mobegi, Victor A;
Duffy, Craig W;
Assefa, Samuel A;
Kwiatkowski, Dominic P;
Laman, Eugene;
Loua, Kovana M;
Conway, David J;
(2016)
Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections.
Malaria journal, 15 (1).
275-.
ISSN 1475-2875
DOI: https://doi.org/10.1186/s12936-016-1324-4
Ocholla, Harold;
Preston, Mark D;
Mipando, Mwapatsa;
Jensen, Anja TR;
Campino, Susana;
MacInnis, Bronwyn;
Alcock, Daniel;
Terlouw, Anja;
Zongo, Issaka;
Oudraogo, Jean-Bosco;
+13 more...
Djimde, Abdoulaye A;
Assefa, Samuel;
Doumbo, Ogobara K;
Borrmann, Steffen;
Nzila, Alexis;
Marsh, Kevin;
Fairhurst, Rick M;
Nosten, Francois;
Anderson, Tim JC;
Kwiatkowski, Dominic P;
Craig, Alister;
Clark, Taane G;
Montgomery, Jacqui;
(2014)
Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates.
The Journal of infectious diseases, 210 (12).
pp. 1991-2000.
ISSN 0022-1899
DOI: https://doi.org/10.1093/infdis/jiu349
Preston, Mark D;
Assefa, Samuel A;
Ocholla, Harold;
Sutherland, Colin J;
Borrmann, Steffen;
Nzila, Alexis;
Michon, Pascal;
Hien, Tran Tinh;
Bousema, Teun;
Drakeley, Christopher J;
+9 more...
Zongo, Issaka;
Ouédraogo, Jean-Bosco;
Djimde, Abdoulaye A;
Doumbo, Ogobara K;
Nosten, Francois;
Fairhurst, Rick M;
Conway, David J;
Roper, Cally;
Clark, Taane G;
(2013)
PlasmoView: a web-based resource to visualise global Plasmodium falciparum genomic variation.
The Journal of infectious diseases, 209 (11).
pp. 1808-1815.
ISSN 0022-1899
DOI: https://doi.org/10.1093/infdis/jit812
Preston, Mark D;
Campino, Susana;
Assefa, Samuel A;
Echeverry, Diego F;
Ocholla, Harold;
Amambua-Ngwa, Alfred;
Stewart, Lindsay B;
Conway, David J;
Borrmann, Steffen;
Michon, Pascal;
+12 more...
Zongo, Issaka;
Ouédraogo, Jean-Bosco;
Djimde, Abdoulaye A;
Doumbo, Ogobara K;
Nosten, Francois;
Pain, Arnab;
Bousema, Teun;
Drakeley, Chris J;
Fairhurst, Rick M;
Sutherland, Colin J;
Roper, Cally;
Clark, Taane G;
(2014)
A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains.
Nature communications, 5 (1).
4052-.
ISSN 2041-1723
DOI: https://doi.org/10.1038/ncomms5052
Sepúlveda, Nuno;
Campino, Susana G;
Assefa, Samuel A;
Sutherland, Colin J;
Pain, Arnab;
Clark, Taane G;
(2013)
A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data.
BMC genomics, 14 (1).
128-.
ISSN 1471-2164
DOI: https://doi.org/10.1186/1471-2164-14-128