Assefa, Samuel A; Preston, Mark D; Campino, Susana; Ocholla, Harold; Sutherland, Colin J; Clark, Taane G; (2014) estMOI: estimating multiplicity of infection using parasite deep sequencing data. Bioinformatics (Oxford, England), 30 (9). pp. 1292-1294. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btu005

Assefa, Samuel; Lim, Caeul; Preston, Mark D; Duffy, Craig W; Nair, Mridul B; Adroub, Sabir A; Kadir, Khamisah A; Goldberg, Jonathan M; Neafsey, Daniel E; Divis, Paul; +5 more... Clark, Taane G; Duraisingh, Manoj T; Conway, David J; Pain, Arnab; Singh, Balbir; (2015) Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi. Proceedings of the National Academy of Sciences of the United States of America, 112 (42). pp. 13027-13032. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1509534112

Cairns, MD; Preston, MD; Lawley, TD; Clark, TG; Stabler, RA; Wren, BW; (2015) Genomic Epidemiology of a Protracted Hospital Outbreak Caused by a Toxin A-Negative Clostridium difficile Sublineage PCR Ribotype 017 Strain in London, England. Journal of clinical microbiology, 53 (10). pp. 3141-3147. ISSN 0095-1137 DOI: https://doi.org/10.1128/JCM.00648-15

Clark, Taane G; Mallard, Kim; Coll, Francesc; Preston, Mark; Assefa, Samuel; Harris, David; Ogwang, Sam; Mumbowa, Francis; Kirenga, Bruce; O'Sullivan, Denise M; +8 more... Okwera, Alphonse; Eisenach, Kathleen D; Joloba, Moses; Bentley, Stephen D; Ellner, Jerrold J; Parkhill, Julian; Jones-López, Edward C; McNerney, Ruth; (2013) Elucidating emergence and transmission of multidrug-resistant tuberculosis in treatment experienced patients by whole genome sequencing. PloS one, 8 (12). e83012-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0083012

Coll, Francesc; Mallard, Kim; Preston, Mark D; Bentley, Stephen; Parkhill, Julian; McNerney, Ruth; Martin, Nigel; Clark, Taane G; (2012) SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences. Bioinformatics (Oxford, England), 28 (22). pp. 2991-2993. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bts544

Coll, Francesc; McNerney, Ruth; Preston, Mark D; Guerra-Assunção, José Afonso; Warry, Andrew; Hill-Cawthorne, Grant; Mallard, Kim; Nair, Mridul; Miranda, Anabela; Alves, Adriana; +9 more... Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Hasan, Zahra; Hasan, Rumina; Glynn, Judith R; Martin, Nigel; Pain, Arnab; Clark, Taane G; (2015) Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome medicine, 7 (1). 51-. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-015-0164-0

Coll, Francesc; Preston, Mark; Guerra-Assunção, José Afonso; Hill-Cawthorn, Grant; Harris, David; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Drobniewski, Francis; Gagneux, Sebastien; +6 more... Glynn, Judith R; Pain, Arnab; Parkhill, Julian; McNerney, Ruth; Martin, Nigel; Clark, Taane G; (2014) PolyTB: a genomic variation map for Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland), 94 (3). pp. 346-354. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2014.02.005

Naeem, Raeece; Hidayah, Lailatul; Preston, Mark D; Clark, Taane G; Pain, Arnab; (2014) SVAMP: sequence variation analysis, maps and phylogeny. Bioinformatics (Oxford, England), 30 (15). pp. 2227-2229. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/btu176

Ocholla, Harold; Preston, Mark D; Mipando, Mwapatsa; Jensen, Anja TR; Campino, Susana; MacInnis, Bronwyn; Alcock, Daniel; Terlouw, Anja; Zongo, Issaka; Oudraogo, Jean-Bosco; +13 more... Djimde, Abdoulaye A; Assefa, Samuel; Doumbo, Ogobara K; Borrmann, Steffen; Nzila, Alexis; Marsh, Kevin; Fairhurst, Rick M; Nosten, Francois; Anderson, Tim JC; Kwiatkowski, Dominic P; Craig, Alister; Clark, Taane G; Montgomery, Jacqui; (2014) Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates. The Journal of infectious diseases, 210 (12). pp. 1991-2000. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiu349

Preston, MD; Chamberlain, PG; Chandler-Wilde, SN; (2010) A Nyström method for a boundary value problem arising in unsteady water wave problems. IMA Journal of Numerical Analysis. ISSN 0272-4979 https://researchonline.lshtm.ac.uk/id/eprint/1088 Full text not available from this repository.

Preston, Mark D; Assefa, Samuel A; Ocholla, Harold; Sutherland, Colin J; Borrmann, Steffen; Nzila, Alexis; Michon, Pascal; Hien, Tran Tinh; Bousema, Teun; Drakeley, Christopher J; +9 more... Zongo, Issaka; Ouédraogo, Jean-Bosco; Djimde, Abdoulaye A; Doumbo, Ogobara K; Nosten, Francois; Fairhurst, Rick M; Conway, David J; Roper, Cally; Clark, Taane G; (2013) PlasmoView: a web-based resource to visualise global Plasmodium falciparum genomic variation. The Journal of infectious diseases, 209 (11). pp. 1808-1815. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jit812

Preston, Mark D; Campino, Susana; Assefa, Samuel A; Echeverry, Diego F; Ocholla, Harold; Amambua-Ngwa, Alfred; Stewart, Lindsay B; Conway, David J; Borrmann, Steffen; Michon, Pascal; +12 more... Zongo, Issaka; Ouédraogo, Jean-Bosco; Djimde, Abdoulaye A; Doumbo, Ogobara K; Nosten, Francois; Pain, Arnab; Bousema, Teun; Drakeley, Chris J; Fairhurst, Rick M; Sutherland, Colin J; Roper, Cally; Clark, Taane G; (2014) A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains. Nature communications, 5 (1). 4052-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms5052

Preston, Mark D; Dudbridge, Frank; (2014) Utilising family-based designs for detecting rare variant disease associations. Annals of human genetics, 78 (2). pp. 129-140. ISSN 0003-4800 DOI: https://doi.org/10.1111/ahg.12051

Preston, Mark D; Manske, Magnus; Horner, Neil; Assefa, Samuel; Campino, Susana; Auburn, Sarah; Zongo, Issaka; Ouedraogo, Jean-Bosco; Nosten, Francois; Anderson, Tim; +1 more... Clark, Taane G; (2012) VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data. Bioinformatics (Oxford, England), 28 (22). pp. 2983-2985. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bts557

Preston, Mark D; Pitchford, Jonathan W; Wood, A Jamie; (2010) Evolutionary optimality in stochastic search problems. Journal of the Royal Society, Interface / the Royal Society, 7 (50). pp. 1301-1310. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2010.0090 Full text not available from this repository.

Roberts, Chrissy H; Franklin, Christopher S; Makalo, Pateh; Joof, Hassan; Sarr, Isatou; Mahdi, Olaimatu S; Sillah, Ansumana; Bah, Momodou; Payne, Felicity; Jeffreys, Anna E; +13 more... Bottomley, William; Natividad, Angels; Molina-Gonzalez, Sandra; Burr, Sarah E; Preston, Mark; Kwiatkowski, Dominic; Rockett, Kirk A; Clark, Taane G; Burton, Matthew J; Mabey, David CW; Bailey, Robin; Barroso, Inês; Holland, Martin J; (2015) Conjunctival fibrosis and the innate barriers to Chlamydia trachomatis intracellular infection: a genome wide association study. Scientific reports, 5 (1). 17447-. ISSN 2045-2322 DOI: https://doi.org/10.1038/srep17447

Samad, Hanif; Coll, Francesc; Preston, Mark D; Ocholla, Harold; Fairhurst, Rick M; Clark, Taane G; (2015) Imputation-based population genetics analysis of Plasmodium falciparum malaria parasites. PLoS genetics, 11 (4). e1005131-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1005131

Shaw, HA; Preston, MD; Vendrik, KEW; Cairns, MD; Browne, HP; Stabler, RA; Crobach, MJT; Corver, J; Pituch, H; Ingebretsen, A; +7 more... Pirmohamed, M; Faulds-Pain, A; Valiente, E; Lawley, TD; Fairweather, NF; Kuijper, EJ; Wren, BW; (2019) The recent emergence of a highly related virulent Clostridium difficile clade with unique characteristics. Clinical Microbiology and Infection, 26 (4). pp. 492-498. ISSN 1198-743X DOI: https://doi.org/10.1016/j.cmi.2019.09.004

Tosas Auguet, Olga; Stabler, Richard A; Betley, Jason; Preston, Mark D; Dhaliwal, Mandeep; Gaunt, Michael; Ioannou, Avgousta; Desai, Nergish; Karadag, Tacim; Batra, Rahul; +4 more... Otter, Jonathan A; Marbach, Helene; Clark, Taane G; Edgeworth, Jonathan D; (2017) Frequent Undetected Ward-Based Methicillin-Resistant Staphylococcus aureus Transmission Linked to Patient Sharing Between Hospitals. Clinical infectious diseases, 66 (6). pp. 840-848. ISSN 1058-4838 DOI: https://doi.org/10.1093/cid/cix901