Divis, Paul CS; Duffy, Craig W; Kadir, Khamisah A; Singh, Balbir; Conway, David J; (2018) Genome-wide mosaicism in divergence between zoonotic malaria parasite subpopulations with separate sympatric transmission cycles. Molecular ecology, 27 (4). pp. 860-870. ISSN 0962-1083 DOI: https://doi.org/10.1111/mec.14477

Duffy, Craig W; Ba, Hampate; Assefa, Samuel; Ahouidi, Ambroise D; Deh, Yacine B; Tandia, Abderahmane; Kirsebom, Freja CM; Kwiatkowski, Dominic P; Conway, David J; (2017) Population genetic structure and adaptation of malaria parasites on the edge of endemic distribution. Molecular ecology, 26 (11). pp. 2880-2894. ISSN 0962-1083 DOI: https://doi.org/10.1111/mec.14066

Ba, H; Ahouidi, AD; Duffy, CW; Deh, YB; Diedhiou, C; Tandia, A; Diallo, MY; Assefa, S; Lô, BB; Elkory, MB; +1 more... Conway, DJ; (2016) [Evaluation of malaria rapid diagnostic test Optimal-IT® pLDH along the Plasmodium falciparum distribution limit in Mauritania]. Bulletin de la Societe de pathologie exotique (1990), 110 (1). pp. 31-37. ISSN 0037-9085 DOI: https://doi.org/10.1007/s13149-017-0541-y

Ba, Hampâté; Duffy, Craig W; Ahouidi, Ambroise D; Deh, Yacine Boubou; Diallo, Mamadou Yero; Tandia, Abderahmane; Conway, David J; (2016) Widespread distribution of Plasmodium vivax malaria in Mauritania on the interface of the Maghreb and West Africa. Malaria journal, 15 (1). 80-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1118-8

Murray, Lee; Mobegi, Victor A; Duffy, Craig W; Assefa, Samuel A; Kwiatkowski, Dominic P; Laman, Eugene; Loua, Kovana M; Conway, David J; (2016) Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections. Malaria journal, 15 (1). 275-. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1324-4

Assefa, Samuel; Lim, Caeul; Preston, Mark D; Duffy, Craig W; Nair, Mridul B; Adroub, Sabir A; Kadir, Khamisah A; Goldberg, Jonathan M; Neafsey, Daniel E; Divis, Paul; +5 more... Clark, Taane G; Duraisingh, Manoj T; Conway, David J; Pain, Arnab; Singh, Balbir; (2015) Population genomic structure and adaptation in the zoonotic malaria parasite Plasmodium knowlesi. Proceedings of the National Academy of Sciences of the United States of America, 112 (42). pp. 13027-13032. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1509534112

Divis, Paul CS; Singh, Balbir; Anderios, Fread; Hisam, Shamilah; Matusop, Asmad; Kocken, Clemens H; Assefa, Samuel A; Duffy, Craig W; Conway, David J; (2015) Admixture in Humans of Two Divergent Plasmodium knowlesi Populations Associated with Different Macaque Host Species. PLoS pathogens, 11 (5). e1004888-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004888

Duffy, Craig W; Assefa, Samuel A; Abugri, James; Amoako, Nicholas; Owusu-Agyei, Seth; Anyorigiya, Thomas; MacInnis, Bronwyn; Kwiatkowski, Dominic P; Conway, David J; Awandare, Gordon A; (2015) Comparison of genomic signatures of selection on Plasmodium falciparum between different regions of a country with high malaria endemicity. BMC genomics, 16 (1). 527-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-015-1746-3

Mobegi, Victor A; Duffy, Craig W; Amambua-Ngwa, Alfred; Loua, Kovana M; Laman, Eugene; Nwakanma, Davis C; MacInnis, Bronwyn; Aspeling-Jones, Harvey; Murray, Lee; Clark, Taane G; +2 more... Kwiatkowski, Dominic P; Conway, David J; (2014) Genome-wide analysis of selection on the malaria parasite Plasmodium falciparum in West African populations of differing infection endemicity. Molecular biology and evolution, 31 (6). pp. 1490-1499. ISSN 0737-4038 DOI: https://doi.org/10.1093/molbev/msu106

Capewell, Paul; Cooper, Anneli; Duffy, Craig W; Tait, Andy; Turner, C Michael R; Gibson, Wendy; Mehlitz, Dieter; Macleod, Annette; (2013) Human and animal Trypanosomes in Côte d'Ivoire form a single breeding population. PloS one, 8 (7). e67852-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0067852

Duffy, Craig W; MacLean, Lorna; Sweeney, Lindsay; Cooper, Anneli; Turner, C Michael R; Tait, Andy; Sternberg, Jeremy; Morrison, Liam J; MacLeod, Annette; (2013) Population genetics of Trypanosoma brucei rhodesiense: clonality and diversity within and between foci. PLoS neglected tropical diseases, 7 (11). e2526-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0002526

Nwakanma, Davis C; Duffy, Craig W; Amambua-Ngwa, Alfred; Oriero, Eniyou C; Bojang, Kalifa A; Pinder, Margaret; Drakeley, Chris J; Sutherland, Colin J; Milligan, Paul J; Macinnis, Bronwyn; +4 more... Kwiatkowski, Dominic P; Clark, Taane G; Greenwood, Brian M; Conway, David J; (2013) Changes in malaria parasite drug resistance in an endemic population over a 25-year period with resulting genomic evidence of selection. The Journal of infectious diseases, 209 (7). pp. 1126-1135. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jit618

Kaboré, Jacques; Koffi, Mathurin; Bucheton, Bruno; MacLeod, Annette; Duffy, Craig; Ilboudo, Hamidou; Camara, Mamadou; De Meeûs, Thierry; Belem, Adrien Marie Gaston; Jamonneau, Vincent; (2011) First evidence that parasite infecting apparent aparasitemic serological suspects in human African trypanosomiasis are Trypanosoma brucei gambiense and are similar to those found in patients. Infection, genetics and evolution, 11 (6). pp. 1250-1255. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2011.04.014 Full text not available from this repository.

Kaboré, Jacques; Macleod, Annette; Jamonneau, Vincent; Ilboudo, Hamidou; Duffy, Craig; Camara, Mamady; Camara, Oumou; Belem, Adrien Marie Gaston; Bucheton, Bruno; De Meeûs, Thierry; (2011) Population genetic structure of Guinea Trypanosoma brucei gambiense isolates according to host factors. Infection, genetics and evolution, 11 (5). pp. 1129-1135. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2011.04.011 Full text not available from this repository.

Tait, Andy; Morrison, Liam J; Duffy, Craig W; Cooper, Anneli; Turner, C Mike R; Macleod, Annette; (2011) Trypanosome genetics: populations, phenotypes and diversity. Veterinary parasitology, 181 (1). pp. 61-68. ISSN 0304-4017 DOI: https://doi.org/10.1016/j.vetpar.2011.04.024 Full text not available from this repository.

Duffy, Craig W; Morrison, Liam J; Black, Alana; Pinchbeck, Gina L; Christley, Robert M; Schoenefeld, Andreas; Tait, Andy; Turner, C Michael R; MacLeod, Annette; (2009) Trypanosoma vivax displays a clonal population structure. International journal for parasitology, 39 (13). pp. 1475-1483. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2009.05.012 Full text not available from this repository.