Li, Shaobo; Spitz, Natalia; Ghantous, Akram; Abrishamcar, Sarina; Reimann, Brigitte; Marques, Irene; Silver, Matt J; Aguilar-Lacasaña, Sofía; Kitaba, Negusse; Rezwan, Faisal I; +56 more... Röder, Stefan; Sirignano, Lea; Tuhkanen, Johanna; Mancano, Giulia; Sharp, Gemma C; Metayer, Catherine; Morimoto, Libby; Stein, Dan J; Zar, Heather J; Alfano, Rossella; Nawrot, Tim; Wang, Congrong; Kajantie, Eero; Keikkala, Elina; Mustaniemi, Sanna; Ronkainen, Justiina; Sebert, Sylvain; Silva, Wnurinham; Vääräsmäki, Marja; Jaddoe, Vincent WV; Bernstein, Robin M; Prentice, Andrew M; Cosin-Tomas, Marta; Dwyer, Terence; Håberg, Siri Eldevik; Herceg, Zdenko; Magnus, Maria C; Munthe-Kaas, Monica Cheng; Page, Christian M; Völker, Maja; Gilles, Maria; Send, Tabea; Witt, Stephanie; Zillich, Lea; Gagliardi, Luigi; Richiardi, Lorenzo; Czamara, Darina; Räikkönen, Katri; Chatzi, Lida; Vafeiadi, Marina; Arshad, S Hasan; Ewart, Susan; Plusquin, Michelle; Felix, Janine F; Moore, Sophie E; Vrijheid, Martine; Holloway, John W; Karmaus, Wilfried; Herberth, Gunda; Zenclussen, Ana; Streit, Fabian; Lahti, Jari; Hüls, Anke; Hoang, Thanh T; London, Stephanie J; Wiemels, Joseph L; (2024) A Pregnancy and Childhood Epigenetics Consortium (PACE) meta-analysis highlights potential relationships between birth order and neonatal blood DNA methylation. Communications biology, 7 (1). 66-. ISSN 2399-3642 DOI: https://doi.org/10.1038/s42003-023-05698-x

Candler, T; (2023) Assessing the influence of maternal nutrition-sensitive epigenetic signatures in the POMC and PAX-8 genes on health-related outcomes in offspring. PhD (research paper style) thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04669379

Derakhshan, M; (2023) Identification and characterisation of tissue- and ethnicity-independent hypervariable DNA methylation loci in humans. PhD thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04671560

Antoun, Elie; Issarapu, Prachand; di Gravio, Chiara; Shrestha, Smeeta; Betts, Modupeh; Saffari, Ayden; Sahariah, Sirazul A; Sankareswaran, Alagu; Arumalla, Manisha; Prentice, Andrew M; +5 more... Fall, Caroline HD; Silver, Matt J; Chandak, Giriraj R; Lillycrop, Karen A; EMPHASIS study group; EMPHASIS study group; (2022) DNA methylation signatures associated with cardiometabolic risk factors in children from India and The Gambia: results from the EMPHASIS study. Clinical epigenetics, 14 (1). 6-. ISSN 1868-7075 DOI: https://doi.org/10.1186/s13148-021-01213-3

Derakhshan, Maria; Kessler, Noah J; Ishida, Miho; Demetriou, Charalambos; Brucato, Nicolas; Moore, Gudrun E; Fall, Caroline HD; Chandak, Giriraj R; Ricaut, Francois-Xavier; Prentice, Andrew M; +2 more... Hellenthal, Garrett; Silver, Matt J; (2022) Tissue- and ethnicity-independent hypervariable DNA methylation states show evidence of establishment in the early human embryo. Nucleic Acids Research, 50 (12). pp. 6735-6752. ISSN 0305-1048 DOI: https://doi.org/10.1093/nar/gkac503

Silver, Matt J; Saffari, Ayden; Kessler, Noah J; Chandak, Gririraj R; Fall, Caroline HD; Issarapu, Prachand; Dedaniya, Akshay; Betts, Modupeh; Moore, Sophie E; Routledge, Michael N; +6 more... Herceg, Zdenko; Cuenin, Cyrille; Derakhshan, Maria; James, Philip T; Monk, David; Prentice, Andrew M; (2022) Environmentally sensitive hotspots in the methylome of the early human embryo. eLife, 11. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.72031

Candler, Toby; Kessler, Noah J; Gunasekara, Chathura J; Ward, Kate A; James, Philip; Laritsky, Eleonora; Baker, Maria S; Dyer, Roger; Elango, Rajavel; Jeffries, David; +5 more... Waterland, Robert A; Moore, Sophie E; Ludgate, Marian; Prentice, Andrew M; Silver, Matt J; (2021) DNA methylation at a nutritionally sensitive region of the PAX8 gene is associated with thyroid volume and function in Gambian children. Science Advances, 7 (45). eabj1561-. ISSN 2375-2548 DOI: https://doi.org/10.1126/sciadv.abj1561

James, Philip T; Ali, Zakari; Armitage, Andrew E; Bonell, Ana; Cerami, Carla; Drakesmith, Hal; Jobe, Modou; Jones, Kerry S; Liew, Zara; Moore, Sophie E; +8 more... Morales-Berstein, Fernanda; Nabwera, Helen M; Nadjm, Behzad; Pasricha, Sant-Rayn; Scheelbeek, Pauline; Silver, Matt J; Teh, Megan R; Prentice, Andrew M; The Role of Nutrition in COVID-19 Susceptibility and Severity of Disease: A Systematic Review. The Journal of Nutrition, 151 (7). pp. 1854-1878. ISSN 0022-3166 DOI: https://doi.org/10.1093/jn/nxab059

James, Philip T; Ali, Zakari; Armitage, Andrew E; Bonell, Ana; Cerami, Carla; Drakesmith, Hal; Jobe, Modou; Jones, Kerry S; Liew, Zara; Moore, Sophie E; +8 more... Morales-Berstein, Fernanda; Nabwera, Helen M; Nadjm, Behzad; Pasricha, Sant-Rayn; Scheelbeek, Pauline; Silver, Matt J; Teh, Megan R; Prentice, Andrew M; (2020) Could nutrition modulate COVID-19 susceptibility and severity of disease? A systematic review. MedRxiv. DOI: https://doi.org/10.1101/2020.10.19.20214395

Maasen, Kim; James, Philip T; Prentice, Andrew M; Moore, Sophie E; Fall, Caroline H; Chandak, Giriraj R; Betts, Modupeh; Silver, Matt J; Buxton, Jessica L; (2020) Periconceptional environment predicts leukocyte telomere length in a cross-sectional study of 7-9 year old rural Gambian children. Sci Rep, 10 (1). 9675-. DOI: https://doi.org/10.1038/s41598-020-66729-9

Saffari, Ayden; Shrestha, Smeeta; Issarapu, Prachand; Sajjadi, Sara; Betts, Modupeh; Sahariah, Sirazul Ameen; Tomar, Ashutosh Singh; James, Philip; Dedaniya, Akshay; Yadav, Dilip K; +7 more... Kumaran, Kalyanaraman; Prentice, Andrew M; Lillycrop, Karen A; Fall, Caroline HD; Chandak, Giriraj R; Silver, Matt J; EMPHASIS Study Group; (2020) Effect of maternal preconceptional and pregnancy micronutrient interventions on children's DNA methylation: Findings from the EMPHASIS study. The American Journal of Clinical Nutrition, 112 (4). pp. 1099-1113. ISSN 0002-9165 DOI: https://doi.org/10.1093/ajcn/nqaa193

Silver, Matt J; (2020) Intergenerational Influences on Child Development: An Epigenetic Perspective. Nestle Nutrition Institute workshop series, 93. pp. 145-152. ISSN 1664-2147 DOI: https://doi.org/10.1159/000503351

Stevenson, Kerrie; Lillycrop, Karen A; Silver, Matt J; (2020) Fetal programming and epigenetics. Current Opinion in Endocrine and Metabolic Research, 13. pp. 1-6. ISSN 2451-9650 DOI: https://doi.org/10.1016/j.coemr.2020.07.005

Candler, T; Kühnen, P; Prentice, AM; Silver, M; (2019) Epigenetic regulation of POMC; implications for nutritional programming, obesity and metabolic disease. Frontiers in Neuroendocrinology, 54. 100773-. ISSN 0091-3022 DOI: https://doi.org/10.1016/j.yfrne.2019.100773

Gunasekara, Chathura J; Scott, C Anthony; Laritsky, Eleonora; Baker, Maria S; MacKay, Harry; Duryea, Jack D; Kessler, Noah J; Hellenthal, Garrett; Wood, Alexis C; Hodges, Kelly R; +9 more... Gandhi, Manisha; Hair, Amy B; Silver, Matt J; Moore, Sophie E; Prentice, Andrew M; Li, Yumei; Chen, Rui; Coarfa, Cristian; Waterland, Robert A; (2019) A genomic atlas of systemic interindividual epigenetic variation in humans. Genome biology, 20 (1). 105-. ISSN 1474-7596 DOI: https://doi.org/10.1186/s13059-019-1708-1

James, PT; (2019) Maternal nutrition, seasonality and epigenetics: an exploration of one-carbon metabolism and a novel nutritional supplement design in The Gambia. PhD (research paper style) thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04652090

James, Philip T; Jawla, Ousubie; Mohammed, Nuredin I; Ceesay, Kabiru; Akemokwe, Fatai M; Sonko, Bakary; Sise, Ebrima A; Prentice, Andrew M; Silver, Matt J; (2019) A novel nutritional supplement to reduce plasma homocysteine in nonpregnant women: A randomised controlled trial in The Gambia. PLoS medicine, 16 (8). e1002870-. ISSN 1549-1277 DOI: https://doi.org/10.1371/journal.pmed.1002870

Küpers, Leanne K; Monnereau, Claire; Sharp, Gemma C; Yousefi, Paul; Salas, Lucas A; Ghantous, Akram; Page, Christian M; Reese, Sarah E; Wilcox, Allen J; Czamara, Darina; +117 more... Starling, Anne P; Novoloaca, Alexei; Lent, Samantha; Roy, Ritu; Hoyo, Cathrine; Breton, Carrie V; Allard, Catherine; Just, Allan C; Bakulski, Kelly M; Holloway, John W; Everson, Todd M; Xu, Cheng-Jian; Huang, Rae-Chi; van der Plaat, Diana A; Wielscher, Matthias; Merid, Simon Kebede; Ullemar, Vilhelmina; Rezwan, Faisal I; Lahti, Jari; van Dongen, Jenny; Langie, Sabine AS; Richardson, Tom G; Magnus, Maria C; Nohr, Ellen A; Xu, Zongli; Duijts, Liesbeth; Zhao, Shanshan; Zhang, Weiming; Plusquin, Michelle; DeMeo, Dawn L; Solomon, Olivia; Heimovaara, Joosje H; Jima, Dereje D; Gao, Lu; Bustamante, Mariona; Perron, Patrice; Wright, Robert O; Hertz-Picciotto, Irva; Zhang, Hongmei; Karagas, Margaret R; Gehring, Ulrike; Marsit, Carmen J; Beilin, Lawrence J; Vonk, Judith M; Jarvelin, Marjo-Riitta; Bergström, Anna; Örtqvist, Anne K; Ewart, Susan; Villa, Pia M; Moore, Sophie E; Willemsen, Gonneke; Standaert, Arnout RL; Håberg, Siri E; Sørensen, Thorkild IA; Taylor, Jack A; Räikkönen, Katri; Yang, Ivana V; Kechris, Katerina; Nawrot, Tim S; Silver, Matt J; Gong, Yun Yun; Richiardi, Lorenzo; Kogevinas, Manolis; Litonjua, Augusto A; Eskenazi, Brenda; Huen, Karen; Mbarek, Hamdi; Maguire, Rachel L; Dwyer, Terence; Vrijheid, Martine; Bouchard, Luigi; Baccarelli, Andrea A; Croen, Lisa A; Karmaus, Wilfried; Anderson, Denise; de Vries, Maaike; Sebert, Sylvain; Kere, Juha; Karlsson, Robert; Arshad, Syed Hasan; Hämäläinen, Esa; Routledge, Michael N; Boomsma, Dorret I; Feinberg, Andrew P; Newschaffer, Craig J; Govarts, Eva; Moisse, Matthieu; Fallin, M Daniele; Melén, Erik; Prentice, Andrew M; Kajantie, Eero; Almqvist, Catarina; Oken, Emily; Dabelea, Dana; Boezen, H Marike; Melton, Phillip E; Wright, Rosalind J; Koppelman, Gerard H; Trevisi, Letizia; Hivert, Marie-France; Sunyer, Jordi; Munthe-Kaas, Monica C; Murphy, Susan K; Corpeleijn, Eva; Wiemels, Joseph; Holland, Nina; Herceg, Zdenko; Binder, Elisabeth B; Davey Smith, George; Jaddoe, Vincent WV; Lie, Rolv T; Nystad, Wenche; London, Stephanie J; Lawlor, Debbie A; Relton, Caroline L; Snieder, Harold; Felix, Janine F; (2019) Meta-analysis of epigenome-wide association studies in neonates reveals widespread differential DNA methylation associated with birthweight. NATURE COMMUNICATIONS, 10 (1). 1893-. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-019-09671-3

James, P; Silver, M; Prentice, A; (2018) Epigenetics, Nutrition, and Infant Health. In: Karakochuk, CD; Whitfield, KC; Green, TJ; Kraemer, K, (eds.) The Biology of the First 1,000 Days. CRC Press, Boca Raton, FL, USA, pp. 335-353. ISBN 9781498756792 https://researchonline.lshtm.ac.uk/id/eprint/4646997

James, Philip T; Dominguez-Salas, Paula; Hennig, Branwen J; Moore, Sophie E; Prentice, Andrew M; Silver, Matt J; (2018) Maternal One-Carbon Metabolism and Infant DNA Methylation between Contrasting Seasonal Environments: A Case Study from The Gambia. Current Developments in Nutrition, 3 (1). nzy082-. DOI: https://doi.org/10.1093/cdn/nzy082

James, Philip; Sajjadi, Sara; Tomar, Ashutosh Singh; Saffari, Ayden; Fall, Caroline HD; Prentice, Andrew M; Shrestha, Smeeta; Issarapu, Prachand; Yadav, Dilip Kumar; Kaur, Lovejeet; +4 more... Lillycrop, Karen; Silver, Matt; Chandak, Giriraj R; EMPHASIS study group; (2018) Candidate genes linking maternal nutrient exposure to offspring health via DNA methylation: a review of existing evidence in humans with specific focus on one-carbon metabolism. International journal of epidemiology, 47 (6). pp. 1910-1937. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyy153

Kessler, Noah J; Waterland, Robert A; Prentice, Andrew M; Silver, Matt J; (2018) Establishment of environmentally sensitive DNA methylation states in the very early human embryo. Science advances, 4 (7). eaat2624-. ISSN 2375-2548 DOI: https://doi.org/10.1126/sciadv.aat2624

Van Baak, Timothy E; Coarfa, Cristian; Dugué, Pierre-Antoine; Fiorito, Giovanni; Laritsky, Eleonora; Baker, Maria S; Kessler, Noah J; Dong, Jianrong; Duryea, Jack D; Silver, Matt J; +14 more... Saffari, Ayden; Prentice, Andrew M; Moore, Sophie E; Ghantous, Akram; Routledge, Michael N; Gong, Yun Yun; Herceg, Zdenko; Vineis, Paolo; Severi, Gianluca; Hopper, John L; Southey, Melissa C; Giles, Graham G; Milne, Roger L; Waterland, Robert A; (2018) Epigenetic supersimilarity of monozygotic twin pairs. Genome Biol, 19 (1). 2-. ISSN 1474-760X DOI: https://doi.org/10.1186/s13059-017-1374-0

Chandak, Giriraj R; Silver, Matt J; Saffari, Ayden; Lillycrop, Karen A; Shrestha, Smeeta; Sahariah, Sirazul Amin; Di Gravio, Chiara; Goldberg, Gail; Tomar, Ashutosh Singh; Betts, Modupeh; +8 more... Sajjadi, Sara; Acolatse, Lena; James, Philip; Issarapu, Prachand; Kumaran, Kalyanaraman; Potdar, Ramesh D; Prentice, Andrew M; Fall, Caroline Hd; (2017) Protocol for the EMPHASIS study; epigenetic mechanisms linking maternal pre-conceptional nutrition and children's health in India and Sub-Saharan Africa. BMC nutrition, 3 (1). 81-. ISSN 2055-0928 DOI: https://doi.org/10.1186/s40795-017-0200-0

Eriksen, Kamilla G; Radford, Elizabeth J; Silver, Matt J; Fulford, Anthony JC; Wegmüller, Rita; Prentice, Andrew M; (2017) Influence of intergenerational in utero parental energy and nutrient restriction on offspring growth in rural Gambia. FASEB journal, 31 (11). pp. 4928-4934. ISSN 0892-6638 DOI: https://doi.org/10.1096/fj.201700017R

Saffari, Ayden; Silver, Matt J; Zavattari, Patrizia; Moi, Loredana; Columbano, Amedeo; Meaburn, Emma L; Dudbridge, Frank; (2017) Estimation of a significance threshold for epigenome-wide association studies. Genetic epidemiology, 42 (1). pp. 20-33. ISSN 0741-0395 DOI: https://doi.org/10.1002/gepi.22086

Krishnan, Michelle L; Wang, Zi; Silver, Matt; Boardman, James P; Ball, Gareth; Counsell, Serena J; Walley, Andrew J; Montana, Giovanni; Edwards, Anthony David; (2016) Possible relationship between common genetic variation and white matter development in a pilot study of preterm infants. Brain and behavior, 6 (7). e00434-. ISSN 2162-3279 DOI: https://doi.org/10.1002/brb3.434

Kühnen, Peter; Handke, Daniela; Waterland, Robert A; Hennig, Branwen J; Silver, Matt; Fulford, Anthony J; Dominguez-Salas, Paula; Moore, Sophie E; Prentice, Andrew M; Spranger, Joachim; +9 more... Hinney, Anke; Hebebrand, Johannes; Heppner, Frank L; Walzer, Lena; Grötzinger, Carsten; Gromoll, Jörg; Wiegand, Susanna; Grüters, Annette; Krude, Heiko; (2016) Interindividual Variation in DNA Methylation at a Putative POMC Metastable Epiallele Is Associated with Obesity. Cell metabolism, 24 (3). pp. 502-509. ISSN 1550-4131 DOI: https://doi.org/10.1016/j.cmet.2016.08.001

Braithwaite, VS; Jones, KS; Schoenmakers, I; Silver, M; Prentice, A; Hennig, BJ; (2015) Vitamin D binding protein genotype is associated with plasma 25OHD concentration in West African children. Bone, 74. pp. 166-170. ISSN 8756-3282 DOI: https://doi.org/10.1016/j.bone.2014.12.068

Hernandez-Vargas, Hector; Castelino, Jovita; Silver, Matt J; Dominguez-Salas, Paula; Cros, Marie-Pierre; Durand, Geoffroy; Le Calvez-Kelm, Florence; Prentice, Andrew M; Wild, Christopher P; Moore, Sophie E; +4 more... Hennig, Branwen J; Herceg, Zdenko; Gong, Yun Yun; Routledge, Michael N; (2015) Exposure to aflatoxin B1 in utero is associated with DNA methylation in white blood cells of infants in The Gambia. International journal of epidemiology, 44 (4). pp. 1238-1248. ISSN 0300-5771 DOI: https://doi.org/10.1093/ije/dyv027 Full text not available from this repository.

Silver, Matt J; Corbin, Karen D; Hellenthal, Garrett; da Costa, Kerry-Ann; Dominguez-Salas, Paula; Moore, Sophie E; Owen, Jennifer; Prentice, Andrew M; Hennig, Branwen J; Zeisel, Steven H; (2015) Evidence for negative selection of gene variants that increase dependence on dietary choline in a Gambian cohort. FASEB journal, 29 (8). pp. 3426-3435. ISSN 0892-6638 DOI: https://doi.org/10.1096/fj.15-271056

Silver, Matt J; Kessler, Noah J; Hennig, Branwen J; Dominguez-Salas, Paula; Laritsky, Eleonora; Baker, Maria S; Coarfa, Cristian; Hernandez-Vargas, Hector; Castelino, Jovita M; Routledge, Michael N; +8 more... Gong, Yun Yun; Herceg, Zdenko; Lee, Yong Sun; Lee, Kwanbok; Moore, Sophie E; Fulford, Anthony J; Prentice, Andrew M; Waterland, Robert A; (2015) Independent genomewide screens identify the tumor suppressor VTRNA2-1 as a human epiallele responsive to periconceptional environment. Genome biology, 16 (1). 118-. ISSN 1465-6906 DOI: https://doi.org/10.1186/s13059-015-0660-y

Dominguez-Salas, Paula; Moore, Sophie E; Baker, Maria S; Bergen, Andrew W; Cox, Sharon E; Dyer, Roger A; Fulford, Anthony J; Guan, Yongtao; Laritsky, Eleonora; Silver, Matt J; +6 more... Swan, Gary E; Zeisel, Steven H; Innis, Sheila M; Waterland, Robert A; Prentice, Andrew M; Hennig, Branwen J; (2014) Maternal nutrition at conception modulates DNA methylation of human metastable epialleles. Nature communications, 5 (1). 3746-. ISSN 2041-1723 DOI: https://doi.org/10.1038/ncomms4746

Silver, Matt; Chen, Peng; Li, Ruoying; Cheng, Ching-Yu; Wong, Tien-Yin; Tai, E-Shyong; Teo, Yik-Ying; Montana, Giovanni; (2013) Pathways-driven sparse regression identifies pathways and genes associated with high-density lipoprotein cholesterol in two Asian cohorts. PLoS genetics, 9 (11). e1003939-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1003939

Silver, Matt; Janousova, Eva; Hua, Xue; Thompson, Paul M; Montana, Giovanni; Alzheimer's Disease Neuroimaging Initiative; (2012) Identification of gene pathways implicated in Alzheimer's disease using longitudinal imaging phenotypes with sparse regression. NeuroImage, 63 (3). pp. 1681-1694. ISSN 1053-8119 DOI: https://doi.org/10.1016/j.neuroimage.2012.08.002

Silver, Matt; Montana, Giovanni; Alzheimer's Disease Neuroimaging Initiative; (2012) Fast identification of biological pathways associated with a quantitative trait using group lasso with overlaps. Statistical applications in genetics and molecular biology, 11 (1). Article-7. ISSN 2194-6302 DOI: https://doi.org/10.2202/1544-6115.1755

Silver, Matt; Montana, Giovanni; Nichols, Thomas E; Alzheimer's Disease Neuroimaging Initiative; (2011) False positives in neuroimaging genetics using voxel-based morphometry data. NeuroImage, 54 (2). pp. 992-1000. ISSN 1053-8119 DOI: https://doi.org/10.1016/j.neuroimage.2010.08.049

Silver, Matt; Di Paolo, Ezequiel; (2006) Spatial effects favour the evolution of niche construction. Theoretical population biology, 70 (4). pp. 387-400. ISSN 0040-5809 DOI: https://doi.org/10.1016/j.tpb.2006.08.003 Full text not available from this repository.