Items where Author is "Thomson, NR"
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Number of items: 59.
Bibliographic data only
Baker, KS;
Dallman, TJ;
Ashton, PM;
Day, M;
Hughes, G;
Crook, PD;
Gilbart, VL;
Zittermann, S;
Allen, VG;
Howden, BP;
+19 more...
Tomita, T;
Valcanis, M;
Harris, SR;
Connor, TR;
Sintchenko, V;
Howard, P;
Brown, JD;
Petty, NK;
Gouali, M;
Thanh, DP;
Keddy, KH;
Smith, AM;
Talukder, KA;
Faruque, SM;
Parkhill, J;
Baker, S;
Weill, FX;
Jenkins, C;
Thomson, NR;
(2015)
Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study.
The Lancet infectious diseases, 15 (8).
pp. 913-21.
ISSN 1473-3099
DOI: https://doi.org/10.1016/S1473-3099(15)00002-X
Full text not available from this repository.
Baker, S;
Thomson, N;
Weill, FX;
Holt, KE;
(2018)
Genomic insights into the emergence and spread of antimicrobial-resistant bacterial pathogens.
Science (New York, NY), 360 (6390).
pp. 733-738.
ISSN 0036-8075
DOI: https://doi.org/10.1126/science.aar3777
Full text not available from this repository.
Chung The, H;
Rabaa, MA;
Thanh, DP;
Ruekit, S;
Wangchuk, S;
Dorji, T;
Tshering, KP;
Nguyen, TN;
Vinh, PV;
Thanh, TH;
+9 more...
Minh, CN;
Turner, P;
Sar, P;
Thwaites, G;
Holt, KE;
Thomson, NR;
Bodhidatta, L;
Jeffries Mason, C;
Baker, S;
(2015)
Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan.
Microbial genomics, 1 (6).
e000042.
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000042
Full text not available from this repository.
Domman, D;
Chowdhury, F;
Khan, AI;
Dorman, MJ;
Mutreja, A;
Uddin, MI;
Paul, A;
Begum, YA;
Charles, RC;
Calderwood, SB;
+6 more...
Bhuiyan, TR;
Harris, JB;
LaRocque, RC;
Ryan, ET;
Qadri, F;
Thomson, NR;
(2018)
Defining endemic cholera at three levels of spatiotemporal resolution within Bangladesh.
Nature genetics.
ISSN 1061-4036
DOI: https://doi.org/10.1038/s41588-018-0150-8
Full text not available from this repository.
Domman, D;
Quilici, ML;
Dorman, MJ;
Njamkepo, E;
Mutreja, A;
Mather, AE;
Delgado, G;
Morales-Espinosa, R;
Grimont, PAD;
Lizárraga-Partida, ML;
+10 more...
Bouchier, C;
Aanensen, DM;
Kuri-Morales, P;
Tarr, CL;
Dougan, G;
Parkhill, J;
Campos, J;
Cravioto, A;
Weill, FX;
Thomson, NR;
(2017)
Integrated view of Vibrio cholerae in the Americas.
Science (New York, NY), 358 (6364).
pp. 789-793.
ISSN 0036-8075
DOI: https://doi.org/10.1126/science.aao2136
Full text not available from this repository.
Follador, R;
Heinz, E;
Wyres, KL;
Ellington, MJ;
Kowarik, M;
Holt, KE;
Thomson, NR;
(2016)
The diversity of Klebsiella pneumoniae surface polysaccharides.
Microbial genomics, 2 (8).
e000073.
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000073
Full text not available from this repository.
Hadfield, J;
Bénard, A;
Domman, D;
Thomson, N;
(2017)
The Hidden Genomics of Chlamydia trachomatis.
Current topics in microbiology and immunology.
ISSN 0070-217X
DOI: https://doi.org/10.1007/82_2017_39
Full text not available from this repository.
Holt, KE;
Wertheim, H;
Zadoks, RN;
Baker, S;
Whitehouse, CA;
Dance, D;
Jenney, A;
Connor, TR;
Hsu, LY;
Severin, J;
+18 more...
Brisse, S;
Cao, H;
Wilksch, J;
Gorrie, C;
Schultz, MB;
Edwards, DJ;
Nguyen, KV;
Nguyen, TV;
Dao, TT;
Mensink, M;
Minh, VL;
Nhu, NT;
Schultsz, C;
Kuntaman, K;
Newton, PN;
Moore, CE;
Strugnell, RA;
Thomson, NR;
(2015)
Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health.
Proceedings of the National Academy of Sciences of the United States of America, 112 (27).
E3574-81.
ISSN 0027-8424
DOI: https://doi.org/10.1073/pnas.1501049112
Full text not available from this repository.
Holt, KathrynE;
Tran Vu Thieu, Nga;
Duy Pham, Thanh;
Ha, Vinh;
Kim, DongWook;
My Phan Vu, Tra;
Campbell, JamesI;
Nguyen van Minh, Hoang;
Nguyen Thanh, Vinh;
Pham Van, Minh;
+20 more...
Cao Thu, Thuy;
Tran Thi Thu, Nga;
Thompson, Corinne;
Tran Thi Ngoc, Dung;
Nguyen Thi Khanh, Nhu;
Phat Voong, Vinh;
Pham Thi Ngoc, Tuyet;
Hoang le, Phuc;
Nguyen Thi Nam, Lien;
Bui Duc, Phu;
Nguyen Thi Thuy, Ai;
Nguyen Manh, Tien;
Nguyen, Dong;
Parry, ChristopherM;
Tran Tinh, Hien;
Farrar, JeremyJ;
Parkhill, Julian;
Dougan, Gordon;
Thomson, NicholasR;
Baker, Stephen;
(2013)
Tracking the establishment of local endemic populations of an emergent enteric pathogen.
Proceedings of the National Academy of Sciences of the United States of America, 110 (43).
pp. 17522-17527.
ISSN 0027-8424
DOI: https://doi.org/10.1073/pnas.1308632110
Full text not available from this repository.
Mather, AE;
Baker, KS;
McGregor, H;
Coupland, P;
Mather, PL;
Deheer-Graham, A;
Parkhill, J;
Bracegirdle, P;
Russell, JE;
Thomson, NR;
(2014)
Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection.
Lancet, 384 (9955).
p. 1720.
ISSN 0140-6736
DOI: https://doi.org/10.1016/S0140-6736(14)61790-6
Full text not available from this repository.
Njamkepo, E;
Fawal, N;
Tran-Dien, A;
Hawkey, J;
Strockbine, N;
Jenkins, C;
Talukder, KA;
Bercion, R;
Kuleshov, K;
Kolínská, R;
+62 more...
Russell, JE;
Kaftyreva, L;
Accou-Demartin, M;
Karas, A;
Vandenberg, O;
Mather, AE;
Mason, CJ;
Page, AJ;
Ramamurthy, T;
Bizet, C;
Gamian, A;
Carle, I;
Sow, AG;
Bouchier, C;
Wester, AL;
Lejay-Collin, M;
Fonkoua, MC;
Hello, SL;
Blaser, MJ;
Jernberg, C;
Ruckly, C;
Mérens, A;
Page, AL;
Aslett, M;
Roggentin, P;
Fruth, A;
Denamur, E;
Venkatesan, M;
Bercovier, H;
Bodhidatta, L;
Chiou, CS;
Clermont, D;
Colonna, B;
Egorova, S;
Pazhani, GP;
Ezernitchi, AV;
Guigon, G;
Harris, SR;
Izumiya, H;
Korzeniowska-Kowal, A;
Lutyńska, A;
Gouali, M;
Grimont, F;
Langendorf, C;
Marejková, M;
Peterson, LA;
Perez-Perez, G;
Ngandjio, A;
Podkolzin, A;
Souche, E;
Makarova, M;
Shipulin, GA;
Ye, C;
Žemličková, H;
Herpay, M;
Grimont, PA;
Parkhill, J;
Sansonetti, P;
Holt, KE;
Brisse, S;
Thomson, NR;
Weill, FX;
(2016)
Global phylogeography and evolutionary history of Shigella dysenteriae type 1.
Nature microbiology, 1.
p. 16027.
ISSN 2058-5276
DOI: https://doi.org/10.1038/nmicrobiol.2016.27
Full text not available from this repository.
Reuter, S;
Connor, TR;
Barquist, L;
Walker, D;
Feltwell, T;
Harris, SR;
Fookes, M;
Hall, ME;
Petty, NK;
Fuchs, TM;
+23 more...
Corander, J;
Dufour, M;
Ringwood, T;
Savin, C;
Bouchier, C;
Martin, L;
Miettinen, M;
Shubin, M;
Riehm, JM;
Laukkanen-Ninios, R;
Sihvonen, LM;
Siitonen, A;
Skurnik, M;
Falcão, JP;
Fukushima, H;
Scholz, HC;
Prentice, MB;
Wren, BW;
Parkhill, J;
Carniel, E;
Achtman, M;
McNally, A;
Thomson, NR;
(2014)
Parallel independent evolution of pathogenicity within the genus Yersinia.
Proceedings of the National Academy of Sciences of the United States of America, 111 (18).
pp. 6768-73.
ISSN 0027-8424
DOI: https://doi.org/10.1073/pnas.1317161111
Full text not available from this repository.
Reuter, S;
Corander, J;
de Been, M;
Harris, S;
Cheng, L;
Hall, M;
Thomson, NR;
McNally, A;
(2015)
Directional gene flow and ecological separation in Yersinia enterocolitica.
Microbial genomics, 1 (3).
e000030.
ISSN 2057-5858
DOI: https://doi.org/10.1099/mgen.0.000030
Full text not available from this repository.
The, HC;
Thanh, DP;
Holt, KE;
Thomson, NR;
Baker, S;
(2016)
The genomic signatures of Shigella evolution, adaptation and geographical spread.
Nature reviews Microbiology, 14 (4).
pp. 235-50.
ISSN 1740-1526
DOI: https://doi.org/10.1038/nrmicro.2016.10
Full text not available from this repository.
Weill, FX;
Domman, D;
Njamkepo, E;
Tarr, C;
Rauzier, J;
Fawal, N;
Keddy, KH;
Salje, H;
Moore, S;
Mukhopadhyay, AK;
+31 more...
Bercion, R;
Luquero, FJ;
Ngandjio, A;
Dosso, M;
Monakhova, E;
Garin, B;
Bouchier, C;
Pazzani, C;
Mutreja, A;
Grunow, R;
Sidikou, F;
Bonte, L;
Breurec, S;
Damian, M;
Njanpop-Lafourcade, BM;
Sapriel, G;
Page, AL;
Hamze, M;
Henkens, M;
Chowdhury, G;
Mengel, M;
Koeck, JL;
Fournier, JM;
Dougan, G;
Grimont, PAD;
Parkhill, J;
Holt, KE;
Piarroux, R;
Ramamurthy, T;
Quilici, ML;
Thomson, NR;
(2017)
Genomic history of the seventh pandemic of cholera in Africa.
Science (New York, NY), 358 (6364).
pp. 785-789.
ISSN 0036-8075
DOI: https://doi.org/10.1126/science.aad5901
Full text not available from this repository.
Wong, VK;
Baker, S;
Pickard, DJ;
Parkhill, J;
Page, AJ;
Feasey, NA;
Kingsley, RA;
Thomson, NR;
Keane, JA;
Weill, FX;
+64 more...
Edwards, DJ;
Hawkey, J;
Harris, SR;
Mather, AE;
Cain, AK;
Hadfield, J;
Hart, PJ;
Thieu, NT;
Klemm, EJ;
Glinos, DA;
Breiman, RF;
Watson, CH;
Kariuki, S;
Gordon, MA;
Heyderman, RS;
Okoro, C;
Jacobs, J;
Lunguya, O;
Edmunds, WJ;
Msefula, C;
Chabalgoity, JA;
Kama, M;
Jenkins, K;
Dutta, S;
Marks, F;
Campos, J;
Thompson, C;
Obaro, S;
MacLennan, CA;
Dolecek, C;
Keddy, KH;
Smith, AM;
Parry, CM;
Karkey, A;
Mulholland, EK;
Campbell, JI;
Dongol, S;
Basnyat, B;
Dufour, M;
Bandaranayake, D;
Naseri, TT;
Singh, SP;
Hatta, M;
Newton, P;
Onsare, RS;
Isaia, L;
Dance, D;
Davong, V;
Thwaites, G;
Wijedoru, L;
Crump, JA;
De Pinna, E;
Nair, S;
Nilles, EJ;
Thanh, DP;
Turner, P;
Soeng, S;
Valcanis, M;
Powling, J;
Dimovski, K;
Hogg, G;
Farrar, J;
Holt, KE;
Dougan, G;
(2015)
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events.
Nature genetics, 47 (6).
pp. 632-9.
ISSN 1061-4036
DOI: https://doi.org/10.1038/ng.3281
Full text not available from this repository.
Public
Andersson, P;
Harris, SR;
Smith, HM;
Hadfield, J;
O'Neill, C;
Cutcliffe, LT;
Douglas, FP;
Asche, LV;
Mathews, JD;
Hutton, SI;
+5 more...
Sarovich, DS;
Tong, SY;
Clarke, IN;
Thomson, NR;
Giffard, PM;
(2016)
Chlamydia trachomatis from Australian Aboriginal people with trachoma are polyphyletic composed of multiple distinctive lineages.
Nature communications, 7.
p. 10688.
ISSN 2041-1723
DOI: https://doi.org/10.1038/ncomms10688
Baker, KS;
Burnett, E;
McGregor, H;
Deheer-Graham, A;
Boinett, C;
Langridge, GC;
Wailan, AM;
Cain, AK;
Thomson, NR;
Russell, JE;
+1 more...
Parkhill, J;
(2015)
The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource.
Genome medicine, 7 (1).
p. 97.
ISSN 1756-994X
DOI: https://doi.org/10.1186/s13073-015-0222-7
Baker, KS;
Campos, J;
Pichel, M;
Della Gaspera, A;
Duarte-Martínez, F;
Campos-Chacón, E;
Bolaños-Acuña, HM;
Guzmán-Verri, C;
Mather, AE;
Diaz Velasco, S;
+19 more...
Zamudio Rojas, ML;
Forbester, JL;
Connor, TR;
Keddy, KH;
Smith, AM;
López de Delgado, EA;
Angiolillo, G;
Cuaical, N;
Fernández, J;
Aguayo, C;
Morales Aguilar, M;
Valenzuela, C;
Morales Medrano, AJ;
Sirok, A;
Weiler Gustafson, N;
Diaz Guevara, PL;
Montaño, LA;
Perez, E;
Thomson, NR;
(2017)
Whole genome sequencing of Shigella sonnei through PulseNet Latin America and Caribbean: advancing global surveillance of foodborne illnesses.
Clinical microbiology and infection.
ISSN 1198-743X
DOI: https://doi.org/10.1016/j.cmi.2017.03.021
Baker, KS;
Dallman, TJ;
Field, N;
Childs, T;
Mitchell, H;
Day, M;
Weill, FX;
Lefèvre, S;
Tourdjman, M;
Hughes, G;
+2 more...
Jenkins, C;
Thomson, N;
(2018)
Horizontal antimicrobial resistance transfer drives epidemics of multiple Shigella species.
Nature communications, 9 (1).
p. 1462.
ISSN 2041-1723
DOI: https://doi.org/10.1038/s41467-018-03949-8
Baker, KS;
Dallman, TJ;
Field, N;
Childs, T;
Mitchell, H;
Day, M;
Weill, FX;
Lefèvre, S;
Tourdjman, M;
Hughes, G;
+2 more...
Jenkins, C;
Thomson, N;
(2018)
Genomic epidemiology of Shigella in the United Kingdom shows transmission of pathogen sublineages and determinants of antimicrobial resistance.
Scientific reports, 8 (1).
p. 7389.
ISSN 2045-2322
DOI: https://doi.org/10.1038/s41598-018-25764-3
Baker, KS;
Mather, AE;
McGregor, H;
Coupland, P;
Langridge, GC;
Day, M;
Deheer-Graham, A;
Parkhill, J;
Russell, JE;
Thomson, NR;
(2014)
The extant World War 1 dysentery bacillus NCTC1: a genomic analysis.
Lancet, 384 (9955).
pp. 1691-7.
ISSN 0140-6736
DOI: https://doi.org/10.1016/S0140-6736(14)61789-X
Cain, AK;
Boinett, CJ;
Barquist, L;
Dordel, J;
Fookes, M;
Mayho, M;
Ellington, MJ;
Goulding, D;
Pickard, D;
Wick, RR;
+3 more...
Holt, KE;
Parkhill, J;
Thomson, NR;
(2018)
Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin.
Scientific reports, 8 (1).
p. 9868.
ISSN 2045-2322
DOI: https://doi.org/10.1038/s41598-018-28199-y
Chowdhury, F;
Mather, AE;
Begum, YA;
Asaduzzaman, M;
Baby, N;
Sharmin, S;
Biswas, R;
Ikhtear Uddin, M;
LaRocque, RC;
Harris, JB;
+5 more...
Calderwood, SB;
Ryan, ET;
Clemens, JD;
Thomson, NR;
Qadri, F;
(2015)
Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014.
PLoS neglected tropical diseases, 9 (11).
e0004183.
ISSN 1935-2727
DOI: https://doi.org/10.1371/journal.pntd.0004183
Chung The, H;
Rabaa, MA;
Pham Thanh, D;
De Lappe, N;
Cormican, M;
Valcanis, M;
Howden, BP;
Wangchuk, S;
Bodhidatta, L;
Mason, CJ;
+12 more...
Nguyen Thi Nguyen, T;
Vu Thuy, D;
Thompson, CN;
Phu Huong Lan, N;
Voong Vinh, P;
Ha Thanh, T;
Turner, P;
Sar, P;
Thwaites, G;
Thomson, NR;
Holt, KE;
Baker, S;
(2016)
South Asia as a Reservoir for the Global Spread of Ciprofloxacin-Resistant Shigella sonnei: A Cross-Sectional Study.
PLoS medicine, 13 (8).
e1002055.
ISSN 1549-1277
DOI: https://doi.org/10.1371/journal.pmed.1002055
Connor, TR;
Barker, CR;
Baker, KS;
Weill, F.-, X;
Talukder, KA;
Smith, AM;
Stephen, B;
Gouali, M;
Duy Pham, T;
Azmi, IJ;
+10 more...
da Silveira, WD;
Semmler, T;
Wieler, LH;
Jenkins, C;
Cravioto, A;
Faruque, SM;
Parkhill, J;
Kim, DW;
Keddy, KH;
Thomson, NR;
(2015)
Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri.
eLife, 4.
e07335.
ISSN 2050-084X
DOI: https://doi.org/10.7554/eLife.07335
Connor, TR;
Owen, SV;
Langridge, G;
Connell, S;
Nair, S;
Reuter, S;
Dallman, TJ;
Corander, J;
Tabing, KC;
Le Hello, S;
+15 more...
Fookes, M;
Doublet, B;
Zhou, Z;
Feltwell, T;
Ellington, MJ;
Herrera, S;
Gilmour, M;
Cloeckaert, A;
Achtman, M;
Parkhill, J;
Wain, J;
De Pinna, E;
Weill, FX;
Peters, T;
Thomson, N;
(2016)
What's in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B.
mBio, 7 (4).
ISSN 2150-7511
DOI: https://doi.org/10.1128/mBio.00527-16
Esson, D;
Gupta, S;
Bailey, D;
Wigley, P;
Wedley, A;
Mather, AE;
Méric, G;
Mastroeni, P;
Sheppard, SK;
Thomson, NR;
+4 more...
Parkhill, J;
Maskell, DJ;
Christie, G;
Grant, AJ;
(2017)
Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape.
Microbial pathogenesis.
ISSN 0882-4010
DOI: https://doi.org/10.1016/j.micpath.2017.01.042
Esson, D;
Mather, AE;
Scanlan, E;
Gupta, S;
de Vries, SP;
Bailey, D;
Harris, SR;
McKinley, TJ;
Méric, G;
Berry, SK;
+7 more...
Mastroeni, P;
Sheppard, SK;
Christie, G;
Thomson, NR;
Parkhill, J;
Maskell, DJ;
Grant, AJ;
(2016)
Genomic variations leading to alterations in cell morphology of Campylobacter spp.
Scientific reports, 6.
p. 38303.
ISSN 2045-2322
DOI: https://doi.org/10.1038/srep38303
Feasey, NA;
Hadfield, J;
Keddy, KH;
Dallman, TJ;
Jacobs, J;
Deng, X;
Wigley, P;
Barquist Barquist, L;
Langridge, GC;
Feltwell, T;
+37 more...
Harris, SR;
Mather, AE;
Fookes, M;
Aslett, M;
Msefula, C;
Kariuki, S;
Maclennan, CA;
Onsare, RS;
Weill, FX;
Le Hello, S;
Smith, AM;
McClelland, M;
Desai, P;
Parry, CM;
Cheesbrough, J;
French, N;
Campos, J;
Chabalgoity, JA;
Betancor, L;
Hopkins, KL;
Nair, S;
Humphrey, TJ;
Lunguya, O;
Cogan, TA;
Tapia, MD;
Sow, SO;
Tennant, SM;
Bornstein, K;
Levine, MM;
Lacharme-Lora, L;
Everett, DB;
Kingsley, RA;
Parkhill, J;
Heyderman, RS;
Dougan, G;
Gordon, MA;
Thomson, NR;
(2016)
Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings.
Nature genetics.
ISSN 1061-4036
DOI: https://doi.org/10.1038/ng.3644
Fookes, MC;
Hadfield, J;
Harris, S;
Parmar, S;
Unemo, M;
Jensen, JS;
Thomson, NR;
(2017)
Mycoplasma genitalium: whole genome sequence analysis, recombination and population structure.
BMC genomics, 18 (1).
p. 993.
ISSN 1471-2164
DOI: https://doi.org/10.1186/s12864-017-4399-6
Hadfield, J;
Harris, SR;
Seth-Smith, HMB;
Parmar, S;
Andersson, P;
Giffard, PM;
Schachter, J;
Moncada, J;
Ellison, L;
Vaulet, MLG;
+28 more...
Fermepin, MR;
Radebe, F;
Mendoza, S;
Ouburg, S;
Morré, SA;
Sachse, K;
Puolakkainen, M;
Korhonen, SJ;
Sonnex, C;
Wiggins, R;
Jalal, H;
Brunelli, T;
Casprini, P;
Pitt, R;
Ison, C;
Savicheva, A;
Shipitsyna, E;
Hadad, R;
Kari, L;
Burton, MJ;
Mabey, D;
Solomon, AW;
Lewis, D;
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