COVID-19 transmission dynamics underlying epidemic waves in Kenya.

Samuel PC Brand ORCID logo ; John Ojal ORCID logo ; Rabia Aziza ORCID logo ; Vincent Were ORCID logo ; Emelda A Okiro ORCID logo ; Ivy K Kombe ORCID logo ; Caroline Mburu ORCID logo ; Morris Ogero ORCID logo ; Ambrose Agweyu ORCID logo ; George M Warimwe ORCID logo ; +23 more... James Nyagwange ORCID logo ; Henry Karanja ORCID logo ; John N Gitonga ; Daisy Mugo ORCID logo ; Sophie Uyoga ORCID logo ; Ifedayo MO Adetifa ORCID logo ; J Anthony G Scott ORCID logo ; Edward Otieno ORCID logo ; Nickson Murunga ; Mark Otiende ORCID logo ; Lynette I Ochola-Oyier ORCID logo ; Charles N Agoti ; George Githinji ; Kadondi Kasera ORCID logo ; Patrick Amoth ORCID logo ; Mercy Mwangangi ; Rashid Aman ; Wangari Ng'ang'a ORCID logo ; Benjamin Tsofa ORCID logo ; Philip Bejon ; Matt J Keeling ORCID logo ; D James Nokes ORCID logo ; Edwine Barasa ORCID logo ; (2021) COVID-19 transmission dynamics underlying epidemic waves in Kenya. Science (New York, N.Y.), 374 (6570). pp. 989-994. ISSN 0036-8075 DOI: 10.1126/science.abk0414
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Policy decisions on COVID-19 interventions should be informed by a local, regional and national understanding of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transmission. Epidemic waves may result when restrictions are lifted or poorly adhered to, variants with new phenotypic properties successfully invade, or infection spreads to susceptible subpopulations. Three COVID-19 epidemic waves have been observed in Kenya. Using a mechanistic mathematical model, we explain the first two distinct waves by differences in contact rates in high and low social-economic groups, and the third wave by the introduction of higher-transmissibility variants. Reopening schools led to a minor increase in transmission between the second and third waves. Socioeconomic and urban–rural population structure are critical determinants of viral transmission in Kenya.


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