Items where Faculty or Department is "Faculty of Infectious and Tropical Diseases > Department of Infection Biology > Dept of Pathogen Molecular Biology (-2019)"

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Number of items: 59.

A

Akuffo, Hannah; Costa, Carlos; van Griensven, Johan; Burza, Sakib; Moreno, Javier; Herrero, Mercè; (2018) New insights into leishmaniasis in the immunosuppressed. PLoS neglected tropical diseases, 12 (5). e0006375-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006375
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Ashley, Elizabeth A; Shetty, Nandini; Patel, Jean; van Doorn, Rogier; Limmathurotsakul, Direk; Feasey, Nicholas A; Okeke, Iruka N; Peacock, Sharon J; (2018) Harnessing alternative sources of antimicrobial resistance data to support surveillance in low-resource settings. Journal of Antimicrobial Chemotherapy, 74 (3). pp. 541-546. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky487
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B

Baddam, R; Kumar, N; Wieler, LH; Lankapalli, AK; Ahmed, N; Peacock, SJ; Semmler, T; (2018) Author Correction: Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis. Nature Research (part of Springer Nature). DOI: https://doi.org/10.1038/s41598-018-25809-7
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Baddam, Ramani; Kumar, Narender; Wieler, Lothar H; Lankapalli, Aditya Kumar; Ahmed, Niyaz; Peacock, Sharon J; Semmler, Torsten; (2018) Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis. Scientific reports, 8 (1). 4628-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-22883-9
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Bossé, JT; LI, Y; Sárközi, R; Fodor, L; Lacouture, S; Gottschalk, M; Amoribieta, MC; Angen, Ø; Nedbalcova, K; Holden, MT; +1 more... Wren, B; (2018) Proposal of serovars 17 and 18 of Actinobacillus pleuropneumoniae based on serological and genotypic analysis. Veterinary microbiology. ISSN 0378-1135 DOI: https://doi.org/10.1016/j.vetmic.2018.02.019
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Burza, S; Croft, SL; Boelaert, M; (2018) Leishmaniasis. Elsevier. DOI: https://doi.org/10.1016/S0140-6736(18)31204-2 Full text not available from this repository.

C

Claessens, Antoine; Harris, Lynne M; Stanojcic, Slavica; Chappell, Lia; Stanton, Adam; Kuk, Nada; Veneziano-Broccia, Pamela; Sterkers, Yvon; Rayner, Julian C; Merrick, Catherine J; (2018) RecQ helicases in the malaria parasite Plasmodium falciparum affect genome stability, gene expression patterns and DNA replication dynamics. PLoS genetics, 14 (7). e1007490-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1007490
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Cook, Sarah; Malyutina, Sofia; Kudryavtsev, Alexander V; Averina, Maria; Bobrova, Natalia; Boytsov, Sergey; Brage, Soren; Clark, Taane G; Diez Benavente, Ernest; Eggen, Anne Elise; +26 more... Hopstock, Laila A; Hughes, Alun; Johansen, Heidi; Kholmatova, Kamila; Kichigina, Anastasiya; Kontsevaya, Anna; Kornev, Michael; Leong, Darryl; Magnus, Per; Mathiesen, Ellisiv; McKee, Martin; Morgan, Katy; Nilssen, Odd; Plakhov, Ilya; Quint, Jennifer K; Rapala, Alicja; Ryabikov, Andrey; Saburova, Lyudmila; Schirmer, Henrik; Shapkina, Marina; Shiekh, Suhail; Shkolnikov, Vladimir M; Stylidis, Michael; Voevoda, Michael; Westgate, Kate; Leon, David A; (2018) Know Your Heart: Rationale, design and conduct of a cross-sectional study of cardiovascular structure, function and risk factors in 4500 men and women aged 35-69 years from two Russian cities, 2015-18. Wellcome open research, 3. 67-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14619.3
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Cook, Sarah; Malyutina, Sofia; Kudryavtsev, Alexander; Averina, Maria; Bobrova, Natalia; Boytsov, Sergey; Brage, Soren; Clark, Taane; Diez Benavente, Ernest; Eggen, Anne Elise; +26 more... Hopstock, Laila; Hughes, Alun; Johansen, Heidi; Kholmatova, Kamila; Kichigina, Anastasiya; Kontsevaya, Anna; Kornev, Michael; Leong, Darryl; Magnus, Per; Mathiesen, Ellisiv; McKee, Martin; Morgan, Katy; Nilssen, Odd; Plakhov, Ilya; Quint, Jennifer; Rapala, Alicja; Ryabikov, Andrey; Saburova, Lyudmila; Schirmer, Henrik; Shapkina, Marina; Shiekh, Suhail; Shkolnikov, Vladimir; Stylidis, Michael; Voevoda, Michael; Westgate, Kate; Leon, David; (2018) Know Your Heart: Rationale, design and conduct of a cross-sectional study of cardiovascular structure, function and risk factors in 4500 men and women aged 35-69 years from two Russian cities, 2015-18. Wellcome Open Research, 3. 67-67-. DOI: https://doi.org/10.12688/wellcomeopenres.14619.1
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D

Duffy, Craig W; Amambua-Ngwa, Alfred; Ahouidi, Ambroise D; Diakite, Mahamadou; Awandare, Gordon A; Ba, Hampate; Tarr, Sarah J; Murray, Lee; Stewart, Lindsay B; D'Alessandro, Umberto; +3 more... Otto, Thomas D; Kwiatkowski, Dominic P; Conway, David J; (2018) Multi-population genomic analysis of malaria parasites indicates local selection and differentiation at the gdv1 locus regulating sexual development. Scientific reports, 8 (1). 15763-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-34078-3
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de Alwis, Ruklanthi; Tu, Le Thi Phuong; Quynh, Nhi Le Thi; Thompson, Corinne N; Anders, Katherine L; Van Thuy, Nguyen Thi; Hieu, Nguyen Trong; Vi, Lu Lan; Chau, Nguyen Van Vinh; Duong, Vu Thuy; +10 more... Chau, Tran Thi Hong; Tuyen, Ha Thanh; Nga, Tran Vu Thieu; Minh, Pham Van; Tan, Trinh Van; Thu, Trang Nguyen Hoang; Nhu, Tran Do Hoang; Thwaites, Guy E; Simmons, Cameron; Baker, Stephen; (2018) The Role of Maternally Acquired Antibody in Providing Protective Immunity Against Nontyphoidal Salmonella in Urban Vietnamese Infants: A Birth Cohort Study. The Journal of infectious diseases, 219 (2). pp. 295-304. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jiy501
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de Goffau, Marcus C; Lager, Susanne; Salter, Susannah J; Wagner, Josef; Kronbichler, Andreas; Charnock-Jones, D Stephen; Peacock, Sharon J; Smith, Gordon CS; Parkhill, Julian; (2018) Recognizing the reagent microbiome. Nature microbiology, 3 (8). pp. 851-853. ISSN 2058-5276 DOI: https://doi.org/10.1038/s41564-018-0202-y Full text not available from this repository.

E

F

Fukuda, Keiji; Limmathurotsakul, Direk; Okeke, Iruka N; Shetty, Nandini; van Doorn, Rogier; Feasey, Nicholas A; Chiara, Francesca; Zoubiane, Ghada; Jinks, Tim; Parkhill, Julian; +5 more... Patel, Jean; Reid, Stuart WJ; Holmes, Alison H; Peacock, Sharon J; Surveillance and Epidemiology of Drug Resistant Infections Conso; (2018) Surveillance and Epidemiology of Drug Resistant Infections Consortium (SEDRIC): Supporting the transition from strategy to action. Wellcome open research, 3. 59-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14586.2
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G

Gatherer, D; Benko, M; Brandt, C; Bryant, N; Dastjerdi, A; Depledge, D; Doszpoly, A; Gompels, U; Hartley, C; Inoue, N; +14 more... Jarosinski, K; Kaul, R; Lacoste, V; Norberg, P; Origgi, F; Orton, R; Pellett, P; Schmid, S; Stewart, J; Szpara, M; Trimpert, J; Vaz, P; Waltzek, T; Davison, A; (2018) 18 new species in the family Herpesviridae. Working Paper. UNSPECIFIED. https://researchonline.lshtm.ac.uk/id/eprint/4648336 Full text not available from this repository.

Gompels, U; (2018) Innovation through Collaboration. Technical Report. The Royal Society. https://researchonline.lshtm.ac.uk/id/eprint/4647441 Full text not available from this repository.

Gouliouris, Theodore; Raven, Kathy E; Ludden, Catherine; Blane, Beth; Corander, Jukka; Horner, Carolyne S; Hernandez-Garcia, Juan; Wood, Paul; Hadjirin, Nazreen F; Radakovic, Milorad; +5 more... Holmes, Mark A; de Goffau, Marcus; Brown, Nicholas M; Parkhill, Julian; Peacock, Sharon J; (2018) Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom. mBio, 9 (6). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01780-18
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Gouliouris, Theodore; Warne, Ben; Cartwright, Edward JP; Bedford, Luke; Weerasuriya, Chathika K; Raven, Kathy E; Brown, Nick M; Török, M Estée; Limmathurotsakul, Direk; Peacock, Sharon J; (2018) Duration of exposure to multiple antibiotics is associated with increased risk of VRE bacteraemia: a nested case-control study. The Journal of antimicrobial chemotherapy, 73 (6). pp. 1692-1699. ISSN 0305-7453 DOI: https://doi.org/10.1093/jac/dky075
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H

Hantrakun, Viriya; Thaipadungpanit, Janjira; Rongkard, Patpong; Srilohasin, Prapaporn; Amornchai, Premjit; Langla, Sayan; Mukaka, Mavuto; Chantratita, Narisara; Wuthiekanun, Vanaporn; Dance, David AB; +3 more... Day, Nicholas PJ; Peacock, Sharon J; Limmathurotsakul, Direk; (2018) Presence of B. thailandensis and B. thailandensis expressing B. pseudomallei-like capsular polysaccharide in Thailand, and their associations with serological response to B. pseudomallei. PLoS neglected tropical diseases, 12 (1). e0006193-. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006193
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Higgins, Matthew; Ravenhall, Matt; Ward, Daniel; Phelan, Jody; Ibrahim, Amy; Forrest, Matthew S; Clark, Taane G; Campino, Susana; (2018) PrimedRPA: primer design for recombinase polymerase amplification assays. Bioinformatics (Oxford, England), 35 (4). pp. 682-684. ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bty701
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Ho, Nhan Thi; Thompson, Corinne; Nhan, Le Nguyen Thanh; Van, Hoang Minh Tu; Dung, Nguyen Thanh; Tran My, Phuc; Quang, Vo Minh; Minh, Ngo Ngoc Quang; Tuan, Tran Anh; Hung, Nguyen Thanh; +6 more... Tuan, Ha Manh; Vinh Chau, Nguyen Van; Wolbers, Marcel; Thwaites, Guy E; Choisy, Marc; Baker, Stephen; (2018) Retrospective analysis assessing the spatial and temporal distribution of paediatric acute respiratory tract infections in Ho Chi Minh City, Vietnam. BMJ open, 8 (1). e016349-. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2017-016349
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K

Klemm, Elizabeth J; Shakoor, Sadia; Page, Andrew J; Qamar, Farah Naz; Judge, Kim; Saeed, Dania K; Wong, Vanessa K; Dallman, Timothy J; Nair, Satheesh; Baker, Stephen; +7 more... Shaheen, Ghazala; Qureshi, Shahida; Yousafzai, Mohammad Tahir; Saleem, Muhammad Khalid; Hasan, Zahra; Dougan, Gordon; Hasan, Rumina; (2018) Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins. mBio, 9 (1). e00105-e00118. ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.00105-18
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Krishna, Aishwarya; Holden, Matthew TG; Peacock, Sharon J; Edwards, Andrew M; Wigneshweraraj, Sivaramesh; (2018) Naturally occurring polymorphisms in the virulence regulator Rsp modulate Staphylococcus aureus survival in blood and antibiotic susceptibility. Microbiology, 164 (9). pp. 1189-1195. ISSN 1350-0872 DOI: https://doi.org/10.1099/mic.0.000695
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Kronbichler, Andreas; Blane, Beth; Holmes, Mark A; Wagner, Josef; Parkhill, Julian; Peacock, Sharon J; Jayne, David RW; Harrison, Ewan M; (2018) Nasal carriage of Staphylococcus pseudintermedius in patients with granulomatosis with polyangiitis. Rheumatology (Oxford, England), 58 (3). pp. 548-550. ISSN 1462-0324 DOI: https://doi.org/10.1093/rheumatology/key317
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Köser, Claudio U; Heyckendorf, Jan; Andres, Sönke; Olaru, Ioana D; Schön, Thomas; Sturegård, Erik; Beckert, Patrick; Schleusener, Viola; Kohl, Thomas A; Hillemann, Doris; +6 more... Moradigaravand, Danesh; Parkhill, Julian; Peacock, Sharon J; Niemann, Stefan; Lange, Christoph; Merker, Matthias; (2018) Reply to Dookie et al., "Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis". Antimicrobial agents and chemotherapy, 62 (8). ISSN 0066-4804 DOI: https://doi.org/10.1128/AAC.00616-18 Full text not available from this repository.

L

Lager, Susanne; de Goffau, Marcus C; Sovio, Ulla; Peacock, Sharon J; Parkhill, Julian; Charnock-Jones, D Stephen; Smith, Gordon CS; (2018) Detecting eukaryotic microbiota with single-cell sensitivity in human tissue. Microbiome, 6 (1). 151-. ISSN 2049-2618 DOI: https://doi.org/10.1186/s40168-018-0529-x
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Lager, Susanne; de Goffau, Marcus C; Sovio, Ulla; Peacock, Sharon J; Parkhill, Julian; Stephen Charnock-Jones, D; Smith, Gordon CS; (2018) Correction to: Detecting eukaryotic microbiota with single-cell sensitivity in human tissue. Microbiome, 6 (1). 188-. ISSN 2049-2618 DOI: https://doi.org/10.1186/s40168-018-0576-3
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O

P

Paksanont, Suporn; Sintiprungrat, Kitisak; Yimthin, Thatcha; Pumirat, Pornpan; Peacock, Sharon J; Chantratita, Narisara; (2018) Effect of temperature on Burkholderia pseudomallei growth, proteomic changes, motility and resistance to stress environments. Scientific reports, 8 (1). 9167-. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-27356-7
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Pantazis, Athena; Clark, Samuel J; (2018) A parsimonious characterization of change in global age-specific and total fertility rates. PloS one, 13 (1). e0190574-. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0190574
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Peacock, Sharon J; Parkhill, Julian; Brown, Nicholas M; (2018) Changing the paradigm for hospital outbreak detection by leading with genomic surveillance of nosocomial pathogens. Microbiology (Reading, England), 164 (10). pp. 1213-1219. ISSN 1350-0872 DOI: https://doi.org/10.1099/mic.0.000700
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R

Raven, Kathy; Blane, Beth; Churcher, Carol; Parkhill, Julian; Peacock, Sharon J; (2018) Are commercial providers a viable option for clinical bacterial sequencing? MICROBIAL GENOMICS, 4 (4). ISSN 2057-5858 DOI: https://doi.org/10.1099/mgen.0.000173
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Ravenhall, Matt; Campino, Susana; Sepúlveda, Nuno; Manjurano, Alphaxard; Nadjm, Behzad; Mtove, George; Wangai, Hannah; Maxwell, Caroline; Olomi, Raimos; Reyburn, Hugh; +4 more... Drakeley, Christopher J; Riley, Eleanor M; Clark, Taane G; MalariaGEN; (2018) Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania. PLoS genetics, 14 (1). e1007172-. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1007172
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Richardson, Emily J; Bacigalupe, Rodrigo; Harrison, Ewan M; Weinert, Lucy A; Lycett, Samantha; Vrieling, Manouk; Robb, Kirsty; Hoskisson, Paul A; Holden, Matthew TG; Feil, Edward J; +10 more... Paterson, Gavin K; Tong, Steven YC; Shittu, Adebayo; van Wamel, Willem; Aanensen, David M; Parkhill, Julian; Peacock, Sharon J; Corander, Jukka; Holmes, Mark; Fitzgerald, J Ross; (2018) Gene exchange drives the ecological success of a multi-host bacterial pathogen. Nature ecology & evolution, 2 (9). pp. 1468-1478. ISSN 2397-334X DOI: https://doi.org/10.1038/s41559-018-0617-0
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S

Sobkowiak, Benjamin; Glynn, Judith R; Houben, Rein MGJ; Mallard, Kim; Phelan, Jody E; Guerra-Assunção, José Afonso; Banda, Louis; Mzembe, Themba; Viveiros, Miguel; McNerney, Ruth; +3 more... Parkhill, Julian; Crampin, Amelia C; Clark, Taane G; (2018) Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. BMC genomics, 19 (1). 613-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-4988-z
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T

Ta, Le Duc Huy; Yap, Gaik Chin; Tay, Carina Jing Xuan; Lim, Alicia Shi Min; Huang, Chiung-Hui; Chu, Collins Wenhan; De Sessions, Paola Florez; Shek, Lynette P; Goh, Anne; Van Bever, Hugo PS; +14 more... Teoh, Oon Hoe; Soh, Jian Yi; Thomas, Biju; Ramamurthy, Mahesh Babu; Goh, Daniel YT; Lay, Christophe; Soh, Shu-E; Chan, Yiong Huak; Saw, Seang-Mei; Kwek, Kenneth; Chong, Yap-Seng; Godfrey, Keith M; Hibberd, Martin Lloyd; Lee, Bee Wah; (2018) Establishment of the nasal microbiota in the first 18 months of life: Correlation with early-onset rhinitis and wheezing. The Journal of allergy and clinical immunology, 142 (1). pp. 86-95. ISSN 0091-6749 DOI: https://doi.org/10.1016/j.jaci.2018.01.032
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Tarr, Sarah J; Díaz-Ingelmo, Ofelia; Stewart, Lindsay B; Hocking, Suzanne E; Murray, Lee; Duffy, Craig W; Otto, Thomas D; Chappell, Lia; Rayner, Julian C; Awandare, Gordon A; +1 more... Conway, David J; (2018) Schizont transcriptome variation among clinical isolates and laboratory-adapted clones of the malaria parasite Plasmodium falciparum. BMC GENOMICS, 19 (1). 894-. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-018-5257-x
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V

Van Nguyen, Dung; Van Nguyen, Cuong; Bonsall, David; Ngo, Tue Tri; Carrique-Mas, Juan; Pham, Anh Hong; Bryant, Juliet E; Thwaites, Guy; Baker, Stephen; Woolhouse, Mark; +1 more... Simmonds, Peter; (2018) Detection and Characterization of Homologues of Human Hepatitis Viruses and Pegiviruses in Rodents and Bats in Vietnam. Viruses, 10 (3). p. 102. ISSN 1999-4915 DOI: https://doi.org/10.3390/v10030102
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W

Wiersinga, W Joost; Virk, Harjeet S; Torres, Alfredo G; Currie, Bart J; Peacock, Sharon J; Dance, David AB; Limmathurotsakul, Direk; (2018) Melioidosis. Nature reviews Disease primers, 4 (1). 17107-. ISSN 2056-676X DOI: https://doi.org/10.1038/nrdp.2017.107 Full text not available from this repository.

Wright, Victoria J; Herberg, Jethro A; Kaforou, Myrsini; Shimizu, Chisato; Eleftherohorinou, Hariklia; Shailes, Hannah; Barendregt, Anouk M; Menikou, Stephanie; Gormley, Stuart; Berk, Maurice; +11 more... Hoang, Long Truong; Tremoulet, Adriana H; Kanegaye, John T; Coin, Lachlan JM; Glodé, Mary P; Hibberd, Martin; Kuijpers, Taco W; Hoggart, Clive J; Burns, Jane C; Levin, Michael; Immunopathology of Respiratory, Inflammatory and Infectious Dise; (2018) Diagnosis of Kawasaki Disease Using a Minimal Whole-Blood Gene Expression Signature. JAMA Pediatrics, 172 (10). e182293-. ISSN 2168-6203 DOI: https://doi.org/10.1001/jamapediatrics.2018.2293
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Wyres, Kelly L; Hawkey, Jane; Hetland, Marit AK; Fostervold, Aasmund; Wick, Ryan R; Judd, Louise M; Hamidian, Mohammad; Howden, Benjamin P; Löhr, Iren H; Holt, Kathryn E; (2018) Emergence and rapid global dissemination of CTX-M-15-associated Klebsiella pneumoniae strain ST307. DOI: https://doi.org/10.1101/352740
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X

Z

Zhu, Yuan O; Aw, Pauline; Aung, Myo Myint; Lee, Hong Kai; Hibberd, Martin; Lee, Guan Huei; (2018) Patterns of mutation within an emerging endemic lineage of HEV-3a. Journal of viral hepatitis, 26 (1). pp. 191-198. ISSN 1352-0504 DOI: https://doi.org/10.1111/jvh.13015 Full text not available from this repository.

This list was generated on Wed Mar 27 05:50:58 2024 GMT.