Items where Faculty or Department is "Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology"

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Number of items: 184.


Abdallah, AM; Hill-Cawthorne, GA; Otto, TD; Coll, F; Guerra-Assunção, JA; Gao, G; Naeem, R; Ansari, H; Malas, TB; Adroub, SA; +10 more... (2015) Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations. Sci Rep, 5. p. 15443. ISSN 2045-2322 DOI: 10.1038/srep15443

Abu-Madi, M; Aly, M; Behnke, JM; Clark, CG; Balkhy, H; (2015) The distribution of Blastocystis subtypes in isolates from Qatar. Parasit Vectors, 8 (1). p. 465. ISSN 1756-3305 DOI: 10.1186/s13071-015-1071-3

Ahmed, HU; Dickinson, L; Charman, S; Weir, S; McCartan, N; Hindley, RG; Freeman, A; Kirkham, AP; Sahu, M; Scott, R; +3 more... (2015) Focal Ablation Targeted to the Index Lesion in Multifocal Localised Prostate Cancer: a Prospective Development Study. European urology. ISSN 0302-2838 DOI: 10.1016/j.eururo.2015.01.030 Full text not available from this repository.

Alam, MM; Solyakov, L; Bottrill, AR; Flueck, C; Siddiqui, FA; Singh, S; Mistry, S; Viskaduraki, M; Lee, K; Hopp, CS; +7 more... (2015) Phosphoproteomics reveals malaria parasite Protein Kinase G as a signalling hub regulating egress and invasion. Nat Commun, 6. p. 7285. ISSN 2041-1723 DOI: 10.1038/ncomms8285

Ali, A; Hasan, Z; McNerney, R; Mallard, K; Hill-Cawthorne, G; Coll, F; Nair, M; Pain, A; Clark, TG; Hasan, R; (2015) Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan. PLoS One, 10 (2). e0117771. ISSN 1932-6203 DOI: 10.1371/journal.pone.0117771

Atchison, CJ; Stowe, J; Andrews, N; Collins, S; Allen, DJ; Nawaz, S; Brown, D; Ramsay, ME; Ladhani, SN; (2015) Rapid Declines in Age Group-Specific Rotavirus Infection and Acute Gastroenteritis Among Vaccinated and Unvaccinated Individuals Within 1 Year of Rotavirus Vaccine Introduction in England and Wales. The Journal of infectious diseases, 213 (2). pp. 243-9. ISSN 0022-1899 DOI: 10.1093/infdis/jiv398 Full text not available from this repository.


Baig, A; Weinert, LA; Peters, SE; Howell, KJ; Chaudhuri, RR; Wang, J; Holden, MT; Parkhill, J; Langford, PR; Rycroft, AN; +3 more... (2015) Whole genome investigation of a divergent clade of the pathogen Streptococcus suis. Front Microbiol, 6. p. 1191. ISSN 1664-302X DOI: 10.3389/fmicb.2015.01191

Baker, KS; Burnett, E; McGregor, H; Deheer-Graham, A; Boinett, C; Langridge, GC; Wailan, AM; Cain, AK; Thomson, NR; Russell, JE; +1 more... (2015) The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource. Genome Med, 7 (1). p. 97. ISSN 1756-994X DOI: 10.1186/s13073-015-0222-7

Baker, KS; Dallman, TJ; Ashton, PM; Day, M; Hughes, G; Crook, PD; Gilbart, VL; Zittermann, S; Allen, VG; Howden, BP; +19 more... (2015) Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. The Lancet infectious diseases, 15 (8). pp. 913-21. ISSN 1473-3099 DOI: 10.1016/S1473-3099(15)00002-X Full text not available from this repository.

Baker, S; (2015) A return to the pre-antimicrobial era? Science (New York, NY), 347 (6226). pp. 1063-1065. ISSN 0036-8075 Full text not available from this repository.

Benavente, ED; Coll, F; Furnham, N; McNerney, R; Glynn, JR; Campino, S; Pain, A; Mohareb, FR; Clark, TG; (2015) PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis. BMC Bioinformatics, 16. p. 155. ISSN 1471-2105 DOI: 10.1186/s12859-015-0603-3

Bhattacharyya, T; Mills, EA; Jansen, AM; Miles, MA; (2015) Prospects for T. cruzi lineage-specific serological surveillance of wild mammals. Acta tropica. ISSN 0001-706X DOI: 10.1016/j.actatropica.2015.06.017 Full text not available from this repository.

Bosse, JT; LI, Y; Atherton, TG; Walker, S; Williamson, SM; Rogers, J; Chaudhuri, RR; Weinert, LA; Holden, MTG; Maskell, DJ; +4 more... (2015) Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae (vol 178, pg 279, 2015). Veterinary microbiology, 179 (3-4). p. 341. ISSN 0378-1135 DOI: 10.1016/j.vetmic.2015.07.002 Full text not available from this repository.

Bossé, JT; Li, Y; Atherton, TG; Walker, S; Williamson, SM; Rogers, J; Chaudhuri, RR; Weinert, LA; Holden, MT; Maskell, DJ; +4 more... (2015) Characterisation of a mobilisable plasmid conferring florfenicol and chloramphenicol resistance in Actinobacillus pleuropneumoniae. Veterinary microbiology, 178 (3-4). pp. 279-82. ISSN 0378-1135 DOI: 10.1016/j.vetmic.2015.05.020

Bossé, JT; Li, Y; Walker, S; Atherton, T; Fernandez Crespo, R; Williamson, SM; Rogers, J; Chaudhuri, RR; Weinert, LA; Oshota, O; +7 more... (2015) Identification of dfrA14 in two distinct plasmids conferring trimethoprim resistance in Actinobacillus pleuropneumoniae. The Journal of antimicrobial chemotherapy. ISSN 0305-7453 DOI: 10.1093/jac/dkv121

Bottai, D; Frigui, W; Clark, S; Rayner, E; Zelmer, A; Andreu, N; de Jonge, MI; Bancroft, GJ; Williams, A; Brodin, P; +1 more... (2015) Increased protective efficacy of recombinant BCG strains expressing virulence-neutral proteins of the ESX-1 secretion system. Vaccine. ISSN 0264-410X DOI: 10.1016/j.vaccine.2015.03.083 Full text not available from this repository.

Bowyer, PW; Stewart, LB; Aspeling-Jones, H; Mensah-Brown, HE; Ahouidi, AD; Amambua-Ngwa, A; Awandare, GA; Conway, DJ; (2015) Variation in Plasmodium falciparum erythrocyte invasion phenotypes and merozoite ligand gene expression across different endemic populations. Infection and immunity, 83 (6). pp. 2575-82. ISSN 0019-9567 DOI: 10.1128/IAI.03009-14 Full text not available from this repository.

Bustos, MF; González-Prieto, G; Ramos, F; Mora, MC; Hashiguchi, Y; Parodi, C; Basombrío, MA; Moreno, S; Monroig, S; Beckar, J; +6 more... (2015) Clinical and epidemiological features of leishmaniasis in northwestern-Argentina through a retrospective analysis of recent cases. Acta tropica. ISSN 0001-706X DOI: 10.1016/j.actatropica.2015.11.008 Full text not available from this repository.

Butt, A; Halliday, N; Williams, P; Atkins, HS; Bancroft, GJ; Titball, RW; (2015) Burkholderia pseudomallei kynB plays a role in AQ production, biofilm formation, bacterial swarming and persistence. Research in microbiology. ISSN 0923-2508 DOI: 10.1016/j.resmic.2015.11.002 Full text not available from this repository.


Carnes, J; Anupama, A; Balmer, O; Jackson, A; Lewis, M; Brown, R; Cestari, I; Desquesnes, M; Gendrin, C; Hertz-Fowler, C; +17 more... (2015) Genome and Phylogenetic Analyses of Trypanosoma evansi Reveal Extensive Similarity to T. brucei and Multiple Independent Origins for Dyskinetoplasty. PLoS neglected tropical diseases, 9 (1). e3404. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0003404

Carrique-Mas, JJ; Tue, NT; Bryant, JE; Saylors, K; Cuong, NV; Hoa, NT; An, NN; Hien, VB; Lao, PV; Tu, NC; +13 more... (2015) The baseline characteristics and interim analyses of the high-risk sentinel cohort of the Vietnam Initiative on Zoonotic InfectiONS (VIZIONS). Sci Rep, 5. p. 17965. ISSN 2045-2322 DOI: 10.1038/srep17965

Cheeseman, IH; Miller, B; Tan, JC; Tan, A; Nair, S; Nkhoma, SC; De Donato, M; Rodulfo, H; Dondorp, A; Branch, OH; +8 more... (2015) Population structure shapes copy number variation in malaria parasites. Molecular biology and evolution, 33 (3). pp. 603-20. ISSN 0737-4038 DOI: 10.1093/molbev/msv282

Cheng, CY; Yamashiro, K; Chen, LJ; Ahn, J; Huang, L; Huang, L; Cheung, CM; Miyake, M; Cackett, PD; Yeo, IY; +94 more... (2015) New loci and coding variants confer risk for age-related macular degeneration in East Asians. Nat Commun, 6. p. 6063. ISSN 2041-1723 DOI: 10.1038/ncomms7063

Chertow, JH; Alkaitis, MS; Nardone, G; Ikeda, AK; Cunnington, AJ; Okebe, J; Ebonyi, AO; Njie, M; Correa, S; Jayasooriya, S; +5 more... (2015) Plasmodium Infection Is Associated with Impaired Hepatic Dimethylarginine Dimethylaminohydrolase Activity and Disruption of Nitric Oxide Synthase Inhibitor/Substrate Homeostasis. PLoS pathogens, 11 (9). e1005119. ISSN 1553-7366 DOI: 10.1371/journal.ppat.1005119

Chowdhury, F; Mather, AE; Begum, YA; Asaduzzaman, M; Baby, N; Sharmin, S; Biswas, R; Ikhtear Uddin, M; LaRocque, RC; Harris, JB; +5 more... (2015) Vibrio cholerae Serogroup O139: Isolation from Cholera Patients and Asymptomatic Household Family Members in Bangladesh between 2013 and 2014. PLoS neglected tropical diseases, 9 (11). e0004183. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0004183

Chung The, H; Karkey, A; Pham Thanh, D; Boinett, CJ; Cain, AK; Ellington, M; Baker, KS; Dongol, S; Thompson, C; Harris, SR; +11 more... (2015) A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO molecular medicine, 7 (3). pp. 227-39. ISSN 1757-4676 DOI: 10.15252/emmm.201404767

Chung The, H; Rabaa, MA; Thanh, DP; Ruekit, S; Wangchuk, S; Dorji, T; Tshering, KP; Nguyen, TN; Vinh, PV; Thanh, TH; +9 more... (2015) Introduction and establishment of fluoroquinolone-resistant Shigella sonnei into Bhutan. Microb Genom, 1 (6). e000042. ISSN 2057-5858 DOI: 10.1099/mgen.0.000042 Full text not available from this repository.

Clark, C; Stensvold, C; (2015) The Continuously Expanding Universe of Entamoeba. In: Nozaki, T; Bhattacharya, A, (eds.) Amebiasis: Biology and Pathogenesis of Entamoeba. Springer, Japan, pp. 9-25. ISBN 978-4-431-55199-7 Full text not available from this repository.

Coll, F; McNerney, R; Preston, MD; Guerra-Assunção, JA; Warry, A; Hill-Cawthorne, G; Mallard, K; Nair, M; Miranda, A; Alves, A; +9 more... (2015) Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome Med, 7 (1). p. 51. ISSN 1756-994X DOI: 10.1186/s13073-015-0164-0

Coll I Cerezo, F; (2015) Bioinformatic analysis of Mycobacterium tuberculosis whole genome data. PhD thesis, London School of Hygiene & Tropical Medicine.

Connor, TR; Barker, CR; Baker, KS; Weill, F.-, X; Talukder, KA; Smith, AM; Stephen, B; Gouali, M; Duy Pham, T; Azmi, IJ; +10 more... (2015) Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri. Elife, 4. e07335. ISSN 2050-084X DOI: 10.7554/eLife.07335

Corcionivoschi, N; Gundogdu, O; Moran, L; Kelly, C; Scates, P; Stef, L; Cean, A; Wren, B; Dorrell, N; Madden, RH; (2015) Virulence characteristics of hcp (+) Campylobacter jejuni and Campylobacter coli isolates from retail chicken. Gut Pathog, 7. p. 20. ISSN 1757-4749 DOI: 10.1186/s13099-015-0067-z

Cornick, JE; Chaguza, C; Harris, SR; Yalcin, F; Senghore, M; Kiran, AM; Govindpershad, S; Ousmane, S; Plessis, MD; Pluschke, G; +12 more... (2015) Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae. Microb Genom, 1 (2). e000027. ISSN 2057-5858 DOI: 10.1099/mgen.0.000027 Full text not available from this repository.

Cortes, T; Cox, RA; (2015) Transcription and translation of the rpsJ, rplN and rRNA operons of the tubercle bacillus. Microbiology (Reading, England), 161 (Pt 4). pp. 719-728. ISSN 1350-0872 DOI: 10.1099/mic.0.000037 Full text not available from this repository.

Costales, JA; Jara-Palacios, MA; Llewellyn, MS; Messenger, LA; Ocaña-Mayorga, S; Villacís, AG; Tibayrenc, M; Grijalva, MJ; (2015) Trypanosoma cruzi population dynamics in the Central Ecuadorian Coast. Acta tropica. ISSN 0001-706X DOI: 10.1016/j.actatropica.2015.07.017 Full text not available from this repository.


Dalla Costa, ER; Vasconcelos, SE; Esteves, LS; Gomes, HM; Gomes, LL; da Silva, PA; Perdigão, J; Portugal, I; Viveiros, M; McNerney, R; +6 more... (2015) Multidrug resistant Mycobacterium tuberculosis of the Latin American Mediteranean lineage wrongly identified as Mycobacterium pinnipedii (ST863) causing active tuberculosis in south Brazil. Journal of clinical microbiology, 53 (12). pp. 3805-11. ISSN 0095-1137 DOI: 10.1128/JCM.02012-15 Full text not available from this repository.

Darabi, H; McCue, K; Beesley, J; Michailidou, K; Nord, S; Kar, S; Humphreys, K; Thompson, D; Ghoussaini, M; Bolla, MK; +121 more... (2015) Polymorphisms in a Putative Enhancer at the 10q21.2 Breast Cancer Risk Locus Regulate NRBF2 Expression. American journal of human genetics, 97 (1). pp. 22-34. ISSN 0002-9297 DOI: 10.1016/j.ajhg.2015.05.002 Full text not available from this repository.

Das, S; Hertrich, N; Perrin, AJ; Withers-Martinez, C; Collins, CR; Jones, ML; Watermeyer, JM; Fobes, ET; Martin, SR; Saibil, HR; +4 more... (2015) Processing of Plasmodium falciparum Merozoite Surface Protein MSP1 Activates a Spectrin-Binding Function Enabling Parasite Egress from RBCs. Cell host & microbe, 18 (4). pp. 433-44. ISSN 1931-3128 DOI: 10.1016/j.chom.2015.09.007

Di Pietro, O; Vicente-García, E; Taylor, MC; Berenguer, D; Viayna, E; Lanzoni, A; Sola, I; Sayago, H; Riera, C; Fisa, R; +5 more... (2015) Multicomponent reaction-based synthesis and biological evaluation of tricyclic heterofused quinolines with multi-trypanosomatid activity. European journal of medicinal chemistry, 105. pp. 120-137. ISSN 0223-5234 DOI: 10.1016/j.ejmech.2015.10.007

Do, LA; Wilm, A; Van Doorn, HR; Lam, HM; Sim, S; Sukumaran, R; Tran, AT; Nguyen, BH; Tran, TT; Tran, QH; +20 more... (2015) Direct whole-genome deep-sequencing of human respiratory syncytial virus A and B from Vietnamese children identifies distinct patterns of inter- and intra-host evolution. The Journal of general virology, 96 (12). pp. 3470-83. ISSN 0022-1317 DOI: 10.1099/jgv.0.000298 Full text not available from this repository.

Drought, LG; (2015) Investigations into Phosphodieterases as Targets for Antimalarial Drug Discovery. PhD thesis, London School of Hygiene & Tropical Medicine.

Dujardin, JP; Khoa, PT; Lam, TX; Panzera, F; Pita, S; Schofield, CJ; (2015) Epidemiological status of kissing-bugs in South East Asia: a preliminary assessment. Acta tropica. ISSN 0001-706X DOI: 10.1016/j.actatropica.2015.06.022 Full text not available from this repository.

da Silva, DT; Tejada, TS; Blum-Menezes, D; Dias, PA; Timm, CD; (2015) Campylobacter species isolated from poultry and humans, and their analysis using PFGE in southern Brazil. International journal of food microbiology, 217. pp. 189-194. ISSN 0168-1605 DOI: 10.1016/j.ijfoodmicro.2015.10.025 Full text not available from this repository.

del Rosario, RC; Poschmann, J; Rouam, SL; Png, E; Khor, CC; Hibberd, ML; Prabhakar, S; (2015) Sensitive detection of chromatin-altering polymorphisms reveals autoimmune disease mechanisms. Nature methods, 12 (5). pp. 458-64. ISSN 1548-7091 DOI: 10.1038/nmeth.3326 Full text not available from this repository.



Farnell, EJ; Tyagi, N; Ryan, S; Chalmers, IW; Pinot de Moira, A; Jones, FM; Wawrzyniak, J; Fitzsimmons, CM; Tukahebwa, EM; Furnham, N; +2 more... (2015) Known Allergen Structures Predict Schistosoma mansoni IgE-Binding Antigens in Human Infection. Front Immunol, 6. p. 26. ISSN 1664-3224 DOI: 10.3389/fimmu.2015.00026

Furuya-Kanamori, L; Marquess, J; Yakob, L; Riley, TV; Paterson, DL; Foster, NF; Huber, CA; Clements, AC; (2015) Asymptomatic Clostridium difficile colonization: epidemiology and clinical implications. BMC Infect Dis, 15 (1). p. 516. ISSN 1471-2334 DOI: 10.1186/s12879-015-1258-4

Furuya-Kanamori, L; Wangdi, K; Yakob, L; McKenzie, SJ; Doi, SA; Clark, J; Paterson, DL; Riley, TV; Clements, AC; (2015) 25-Hydroxyvitamin D Concentrations and Clostridium difficile Infection: A Meta-Analysis. JPEN Journal of parenteral and enteral nutrition. ISSN 0148-6071 DOI: 10.1177/0148607115623457 Full text not available from this repository.


Getachew, S; To, S; Trimarsanto, H; Thriemer, K; Clark, TG; Petros, B; Aseffa, A; Price, RN; Auburn, S; (2015) Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia. PLoS One, 10 (10). e0140780. ISSN 1932-6203 DOI: 10.1371/journal.pone.0140780

Glynn, JR; Guerra-Assunção, JA; Houben, RM; Sichali, L; Mzembe, T; Mwaungulu, LK; Mwaungulu, JN; McNerney, R; Khan, P; Parkhill, J; +2 more... (2015) Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi. PLoS One, 10 (7). e0132840. ISSN 1932-6203 DOI: 10.1371/journal.pone.0132840

Guenot, M; Loizon, S; Howard, J; Costa, G; Baker, DA; Mohabeer, SY; Troye-Blomberg, M; Moreau, JF; Déchanet-Merville, J; Mercereau-Puijalon, O; +2 more... (2015) PHOSPHOANTIGEN BURST UPON PLASMODIUM FALCIPARUM SCHIZONT RUPTURE CAN DISTANTLY ACTIVATE VGAMMA9-VDELTA2 T-CELLS. Infection and immunity, 83 (10). pp. 3816-24. ISSN 0019-9567 DOI: 10.1128/IAI.00446-15

Guerra-Assunção, J; Crampin, A; Houben, R; Mzembe, T; Mallard, K; Coll, F; Khan, P; Banda, L; Chiwaya, A; Pereira, R; +5 more... (2015) Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area. Elife, 4. ISSN 2050-084X DOI: 10.7554/eLife.05166


Hachani, A; Wood, TE; Filloux, A; (2015) Type VI secretion and anti-host effectors. Current opinion in microbiology, 29. pp. 81-93. ISSN 1369-5274 DOI: 10.1016/j.mib.2015.11.006 Full text not available from this repository.

Hao Chung, T; Karkey, A; Duy Pham, T; Boinett, CJ; Cain, AK; Ellington, M; Baker, KS; Dongol, S; Thompson, C; Harris, SR; +11 more... (2015) A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae. EMBO molecular medicine, 7 (3). pp. 227-239. ISSN 1757-4676 Full text not available from this repository.

Hernández, P; Punchak, M; Camacho, M; Hepple, P; McNerney, R; (2015) Investigating the quality of expectorated sputum for tuberculosis diagnosis in Bolivia. The international journal of tuberculosis and lung disease , 19 (9). pp. 1065-7. ISSN 1027-3719 DOI: 10.5588/ijtld.14.0700 Full text not available from this repository.

Holt, KE; Wertheim, H; Zadoks, RN; Baker, S; Whitehouse, CA; Dance, D; Jenney, A; Connor, TR; Hsu, LY; Severin, J; +18 more... (2015) Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health. Proceedings of the National Academy of Sciences of the United States of America, 112 (27). E3574-81. ISSN 0027-8424 DOI: 10.1073/pnas.1501049112 Full text not available from this repository.

Howell, KJ; Peters, SE; Wang, J; Hernandez-Garcia, J; Weinert, LA; Luan, SL; Chaudhuri, RR; Angen, Ø, ; Aragon, V; Williamson, SM; +7 more... (2015) Development of a multiplex PCR for rapid molecular serotyping of Haemophilus parasuis. Journal of clinical microbiology. ISSN 0095-1137 DOI: 10.1128/JCM.01991-15 Full text not available from this repository.

Hughes, J; Stabler, R; Gaunt, M; Karadag, T; Desai, N; Betley, J; Ioannou, A; Aryee, A; Hearn, P; Marbach, H; +4 more... (2015) Clonal variation in high- and low-level phenotypic and genotypic mupirocin resistance of MRSA isolates in south-east London. The Journal of antimicrobial chemotherapy, 70 (12). pp. 3191-9. ISSN 0305-7453 DOI: 10.1093/jac/dkv248 Full text not available from this repository.

Hungerford, D; Read, JM; Cooke, RP; Vivancos, R; Iturriza-Gómara, M; Allen, DJ; French, N; Cunliffe, N; (2015) Early impact of rotavirus vaccination in a large paediatric hospital in the UK. Technical Report. WB Saunders. DOI: 10.1016/j.jhin.2015.12.010


Jacob, AS; Busby, EJ; Levy, AD; Komm, N; Clark, CG; (2015) Expanding the Entamoeba Universe: New Hosts Yield Novel Ribosomal Lineages. The Journal of eukaryotic microbiology, 63 (1). pp. 69-78. ISSN 1066-5234 DOI: 10.1111/jeu.12249 Full text not available from this repository.

Jauneikaite, E; Tocheva, AS; Jefferies, JM; Gladstone, RA; Faust, SN; Christodoulides, M; Hibberd, ML; Clarke, SC; (2015) Current methods for capsular typing of Streptococcus pneumoniae. Journal of microbiological methods, 113. pp. 41-9. ISSN 0167-7012 DOI: 10.1016/j.mimet.2015.03.006 Full text not available from this repository.

Jowiya, W; Brunner, K; Abouelhadid, S; Hussain, HA; Nair, SP; Sadiq, S; Williams, LK; Trantham, EK; Stephenson, H; Wren, BW; +6 more... (2015) Pancreatic Amylase is an Environmental Signal for Regulation of Biofilm Formation and Host Interaction in Campylobacter jejuni. Infection and immunity, 83 (12). pp. 4884-95. ISSN 0019-9567 DOI: 10.1128/IAI.01064-15 Full text not available from this repository.


Kanji, A; Hasan, Z; Ali, A; McNerney, R; Mallard, K; Coll, F; Hill-Cawthorne, G; Nair, M; Clark, TG; Zaver, A; +2 more... (2015) Characterization of genomic variations in SNPs of PE_PGRS genes reveals deletions and insertions in extensively drug resistant (XDR) M. tuberculosis strains from Pakistan. International journal of mycobacteriology, 4 (1). pp. 73-9. ISSN 2212-5531 DOI: 10.1016/j.ijmyco.2014.11.049 Full text not available from this repository.

Kazakos, EI; Gundogdu, O; Hussein, BA; Dorrell, N; Kountouras, I; (2015) Identification of genes involved in sublethal, human beta-defensin (hβD1)-induced stress response in Helicobacter pylori: evidence for unconventional adaptation processes. [Conference or Workshop Item] Full text not available from this repository.

Kumar, N; Miyajima, F; He, M; Roberts, P; Swale, A; Ellison, L; Pickard, D; Smith, G; Molyneux, R; Dougan, G; +5 more... (2015) Genome-based infection tracking reveals dynamics of Clostridium difficile transmission and disease recurrence. Clinical infectious diseases . ISSN 1058-4838 DOI: 10.1093/cid/civ1031


Le, V; Nhu, NT; Cerdeno-Tarraga, A; Campbell, JI; Tuyen, HT; Nhu, TdoH; Tam, PT; Schultsz, C; Thwaites, G; Thomson, NR; +1 more... (2015) Genetic characterization of three qnrS1-harbouring multidrug-resistance plasmids and qnrS1-containing transposons circulating in Ho Chi Minh City, Vietnam. Journal of medical microbiology, 64 (8). pp. 869-78. ISSN 0022-2615 DOI: 10.1099/jmm.0.000100

Lee, GH; Tan, BH; Chi-Yuan Teo, E; Lim, SG; Dan, YY; Wee, A; Aw, PP; Zhu, Y; Hibberd, ML; Tan, CK; +2 more... (2015) Chronic Infection With Camelid Hepatitis E Virus in a Liver-transplant Recipient Who Regularly Consumes Camel Meat and Milk. Gastroenterology, 150 (2). 355-7.e3. ISSN 0016-5085 DOI: 10.1053/j.gastro.2015.10.048 Full text not available from this repository.


Malaria Genomic Epidemiology Network, ; Band, G; Rockett, KA; Spencer, CC; Kwiatkowski, DP; Band, G; Si Le, Q; Clarke, GM; Kivinen, K; Leffler, EM; +87 more... (2015) A novel locus of resistance to severe malaria in a region of ancient balancing selection. Nature, 526 (7572). pp. 253-7. ISSN 0028-0836 DOI: 10.1038/nature15390

Martínez Cuesta, S; Rahman, SA; Furnham, N; Thornton, JM; (2015) The Classification and Evolution of Enzyme Function. Biophysical journal, 109 (6). pp. 1082-6. ISSN 0006-3495 DOI: 10.1016/j.bpj.2015.04.020 Full text not available from this repository.

Maurer-Stroh, S; Lee, CW; Patel, C; Lucero, M; Nohynek, H; Sung, WK; Murad, C; Ma, J; Hibberd, ML; Wong, CW; +1 more... (2015) Comparison of microarray-predicted closest genomes to sequencing for poliovirus vaccine strain similarity and influenza A phylogeny. Diagnostic microbiology and infectious disease, 84 (3). pp. 203-6. ISSN 0732-8893 DOI: 10.1016/j.diagmicrobio.2015.11.003 Full text not available from this repository.

McCarthy, AJ; Martin, P; Cloup, E; Stabler, R; Oswald, E; Taylor, PW; (2015) The Genotoxin Colibactin is a Determinant of Virulence in Escherichia coli K1 Experimental Neonatal Systemic Infection. Infection and immunity. ISSN 0019-9567 DOI: 10.1128/IAI.00716-15 Full text not available from this repository.

Mensah-Brown, HE; Amoako, N; Abugri, J; Stewart, LB; Agongo, G; Dickson, EK; Ofori, MF; Stoute, JA; Conway, DJ; Awandare, GA; (2015) Analysis of erythrocyte invasion mechanisms of Plasmodium falciparum clinical isolates across three endemic areas within one country. The Journal of infectious diseases. ISSN 0022-1899 DOI: 10.1093/infdis/jiv207 Full text not available from this repository.

Messenger, LA; Garcia, L; Vanhove, M; Huaranca, C; Bustamante, M; Torrico, M; Torrico, F; Miles, MA; Llewellyn, MS; (2015) Ecological host fitting of Trypanosoma cruzi TcI in Bolivia: mosaic population structure, hybridization and a role for humans in Andean parasite dispersal. Molecular ecology, 24 (10). pp. 2406-2422. ISSN 0962-1083 DOI: 10.1111/mec.13186

Messenger, LA; Yeo, M; Lewis, MD; Llewellyn, MS; Miles, MA; (2015) Molecular Genotyping of Trypanosoma cruzi for Lineage Assignment and Population Genetics. In: Peacock, C, (ed.) Parasite Genomics Protocols, Second Edition. Humana Press (Springer Imprint), pp. 297-337. ISBN 1064-3745(print)978-1-4939-1437-1(H); 978-1-4939-1438-8(P) Full text not available from this repository.

Mills, DC; Jervis, AJ; Abouelhadid, S; Yates, LE; Cuccui, J; Linton, D; Wren, BW; (2015) Functional analysis of N-linking oligosaccharyl transferase enzymes encoded by deep-sea vent proteobacteria. Glycobiology, 26 (4). pp. 398-409. ISSN 0959-6658 DOI: 10.1093/glycob/cwv111 Full text not available from this repository.

Miwanda, B; Moore, S; Muyembe, J.-, J; Nguefack-Tsague, G; Kabangwa, IK; Ndjakani, DY; Mutreja, A; Thomson, N; Thefenne, H; Garnotel, E; +4 more... (2015) Antimicrobial Drug Resistance of Vibrio cholerae, Democratic Republic of the Congo. Emerging infectious diseases, 21 (5). pp. 847-851. ISSN 1080-6040 DOI: 10.3201/eid2105.141233

Moore, S; Miwanda, B; Sadji, AY; Thefenne, H; Jeddi, F; Rebaudet, S; de Boeck, H; Bidjada, B; Depina, JJ; Bompangue, D; +9 more... (2015) Relationship between Distinct African Cholera Epidemics Revealed via MLVA Haplotyping of 337 Vibrio cholerae Isolates. PLoS neglected tropical diseases, 9 (6). e0003817. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0003817

Moule, MG; Spink, N; Willcocks, S; Lim, J; Guerra-Assunção, JA; Cia, F; Champion, O; Senior, N; Atkins, HS; Clark, T; +3 more... (2015) Characterization of new virulence factors involved in the intracellular growth and survival of Burkholderia pseudomallei. Infection and immunity. ISSN 0019-9567 DOI: 10.1128/IAI.01102-15 Full text not available from this repository.

Mwangala, S; Moland, KM; Nkamba, HC; Musonda, KG; Monze, M; Musukwa, KK; Fylkesnes, K; (2015) Task-Shifting and Quality of HIV Testing Services: Experiences from a National Reference Hospital in Zambia. Plos One, 10 (11). p. 15. ISSN 1932-6203 DOI: 10.1371/journal.pone.0143075


Noviyanti, R; Coutrier, F; Utami, RA; Trimarsanto, H; Tirta, YK; Trianty, L; Kusuma, A; Sutanto, I; Kosasih, A; Kusriastuti, R; +7 more... (2015) Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination. PLoS neglected tropical diseases, 9 (5). e0003739. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0003739


Olmo, F; Gómez-Contreras, F; Navarro, P; Marín, C; Yunta, MJ; Cano, C; Campayo, L; Martín-Oliva, D; Rosales, MJ; Sánchez-Moreno, M; (2015) Synthesis and evaluation of in vitro and in vivo trypanocidal properties of a new imidazole-containing nitrophthalazine derivative. European journal of medicinal chemistry, 106. pp. 106-19. ISSN 0223-5234 DOI: 10.1016/j.ejmech.2015.10.034 Full text not available from this repository.


Parry, CM; Thieu, NT; Dolecek, C; Karkey, A; Gupta, R; Turner, P; Dance, D; Maude, RR; Ha, V; Tran, CN; +25 more... (2015) Erratum for Parry et al., Clinically and Microbiologically Derived Azithromycin Susceptibility Breakpoints for Salmonella enterica Serovars Typhi and Paratyphi A. Antimicrobial agents and chemotherapy, 59 (7). p. 4364. ISSN 0066-4804 DOI: 10.1128/AAC.01014-15 Full text not available from this repository.

Phelan, J; Maitra, A; McNerney, R; Nair, M; Gupta, A; Coll, F; Pain, A; Bhakta, S; Clark, TG; (2015) The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae. International journal of mycobacteriology, 4 (3). pp. 207-16. ISSN 2212-5531 DOI: 10.1016/j.ijmyco.2015.05.001 Full text not available from this repository.

Pieperhoff, MS; Pall, GS; Jiménez-Ruiz, E; Das, S; Melatti, C; Gow, M; Wong, EH; Heng, J; Müller, S; Blackman, MJ; +1 more... (2015) Conditional U1 Gene Silencing in Toxoplasma gondii. PLoS One, 10 (6). e0130356. ISSN 1932-6203 DOI: 10.1371/journal.pone.0130356


Rabaa, MA; Tue, NT; Phuc, TM; Carrique-Mas, J; Saylors, K; Cotten, M; Bryant, JE; Nghia, HD; Cuong, NV; Pham, HA; +26 more... (2015) The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases. EcoHealth. ISSN 1612-9202 DOI: 10.1007/s10393-015-1061-0

Ramdani, G; Naissant, B; Thompson, E; Breil, F; Lorthiois, A; Dupuy, F; Cummings, R; Duffier, Y; Corbett, Y; Mercereau-Puijalon, O; +5 more... (2015) cAMP-Signalling Regulates Gametocyte-Infected Erythrocyte Deformability Required for Malaria Parasite Transmission. PLoS pathogens, 11 (5). e1004815. ISSN 1553-7366 DOI: 10.1371/journal.ppat.1004815

Reuter, S; Corander, J; de Been, M; Harris, S; Cheng, L; Hall, M; Thomson, NR; McNally, A; (2015) Directional gene flow and ecological separation in Yersinia enterocolitica. Microb Genom, 1 (3). e000030. ISSN 2057-5858 DOI: 10.1099/mgen.0.000030 Full text not available from this repository.

Reuter, S; Török, ME; Holden, MT; Reynolds, R; Raven, KE; Blane, B; Donker, T; Bentley, SD; Aanensen, DM; Grundmann, H; +4 more... (2015) Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland. Genome research. ISSN 1088-9051 DOI: 10.1101/gr.196709.115 Full text not available from this repository.

Reynaud, JM; Lulla, V; Kim, DY; Frolova, EI; Frolov, I; (2015) The SD1 Subdomain of Venezuelan Equine Encephalitis Virus Capsid Protein Plays a Critical Role in Nucleocapsid and Particle Assembly. Journal of virology, 90 (4). pp. 2008-2020. ISSN 0022-538X DOI: 10.1128/JVI.02680-15 Full text not available from this repository.

Roberts, CH; Franklin, CS; Makalo, P; Joof, H; Sarr, I; Mahdi, OS; Sillah, A; Bah, M; Payne, F; Jeffreys, AE; +13 more... (2015) Conjunctival fibrosis and the innate barriers to Chlamydia trachomatis intracellular infection: a genome wide association study. Sci Rep, 5. p. 17447. ISSN 2045-2322 DOI: 10.1038/srep17447


Samad, H; Coll, F; Preston, MD; Ocholla, H; Fairhurst, RM; Clark, TG; (2015) Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites. PLoS genetics, 11 (4). e1005131. ISSN 1553-7390 DOI: 10.1371/journal.pgen.1005131

Sander, P; Clark, S; Petrera, A; Vilaplana, C; Meuli, M; Selchow, P; Zelmer, A; Mohanan, D; Andreu, N; Rayner, E; +6 more... (2015) Deletion of zmp1 improves Mycobacterium bovis BCG-mediated protection in a guinea pig model of tuberculosis. Vaccine. ISSN 0264-410X DOI: 10.1016/j.vaccine.2015.01.058 Full text not available from this repository.

Schreiber, F; Kay, S; Frankel, G; Clare, S; Goulding, D; van de Vosse, E; van Dissel, JT; Strugnell, R; Thwaites, G; Kingsley, RA; +2 more... (2015) The Hd, Hj, and Hz66 flagella variants of Salmonella enterica serovar Typhi modify host responses and cellular interactions. Sci Rep, 5. p. 7947. ISSN 2045-2322 DOI: 10.1038/srep07947

Shelton, JM; Corran, P; Risley, P; Silva, N; Hubbart, C; Jeffreys, A; Rowlands, K; Craik, R; Cornelius, V; Hensmann, M; +48 more... (2015) Genetic determinants of anti-malarial acquired immunity in a large multi-centre study. Malar J, 14 (1). p. 333. ISSN 1475-2875 DOI: 10.1186/s12936-015-0833-x

Siddiqui, F; Champion, O; Akram, M; Studholme, D; Eqani, SA; Wren, BW; Titball, R; Bokhari, H; (2015) Molecular detection identified a Type Six Secretion System in Campylobacter jejuni from various sources but not from human cases. Journal of applied microbiology, 118 (5). pp. 1191-8. ISSN 1364-5072 DOI: 10.1111/jam.12748 Full text not available from this repository.

Siddiqui, FM; Ibrahim, M; Noureen, N; Noreen, Z; Titball, RW; Champion, OL; Wren, BW; Studholme, D; Bokhari, H; (2015) Draft Genome Sequence of the Enteropathogenic Bacterium Campylobacter jejuni Strain cj255. Genome Announc, 3 (5). ISSN 2169-8287 DOI: 10.1128/genomeA.01223-15

Sim, S; Aw, PP; Wilm, A; Teoh, G; Hue, KD; Nguyen, NM; Nagarajan, N; Simmons, CP; Hibberd, ML; (2015) Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission. PLoS neglected tropical diseases, 9 (9). e0004052. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0004052

Sola, I; Castellà, S; Viayna, E; Galdeano, C; Taylor, MC; Gbedema, SY; Pérez, B; Clos, MV; Jones, DC; Fairlamb, AH; +3 more... (2015) Synthesis, biological profiling and mechanistic studies of 4-aminoquinoline-based heterodimeric compounds with dual trypanocidal-antiplasmodial activity. Bioorganic & medicinal chemistry, 23 (16). pp. 5156-67. ISSN 0968-0896 DOI: 10.1016/j.bmc.2015.01.031 Full text not available from this repository.

Stallmach, R; Kavishwar, M; Withers-Martinez, C; Hackett, F; Collins, CR; Howell, SA; Yeoh, S; Knuepfer, E; Atid, AJ; Holder, AA; +1 more... (2015) Plasmodium falciparum SERA5 plays a non-enzymatic role in the malarial asexual blood-stage lifecycle. Molecular microbiology, 96 (2). pp. 368-87. ISSN 0950-382X DOI: 10.1111/mmi.12941


Terra, VS; Zhi, X; Kahya, HF; Andrew, PW; Yesilkaya, H; (2015) Pneumococcal 6-Phospho-β-Glucosidase (BglA3) Is Involved in Virulence and Nutrient Metabolism. Infection and immunity, 84 (1). pp. 286-92. ISSN 0019-9567 DOI: 10.1128/IAI.01108-15 Full text not available from this repository.

Thompson, CN; Blacksell, SD; Paris, DH; Arjyal, A; Karkey, A; Dongol, S; Giri, A; Dolecek, C; Day, N; Baker, S; +3 more... (2015) Undifferentiated Febrile Illness in Kathmandu, Nepal. The American journal of tropical medicine and hygiene, 92 (4). pp. 875-8. ISSN 0002-9637 DOI: 10.4269/ajtmh.14-0709

Thompson, CN; Phan, MV; Hoang, NV; Minh, PV; Vinh, NT; Thuy, CT; Nga, TT; Rabaa, MA; Duy, PT; Dung, TT; +19 more... (2015) A Prospective Multi-Center Observational Study of Children Hospitalized with Diarrhea in Ho Chi Minh City, Vietnam. The American journal of tropical medicine and hygiene, 92 (5). pp. 1045-52. ISSN 0002-9637 DOI: 10.4269/ajtmh.14-0655

Thompson, CN; Tu, LT; Anders, KL; Hieu, NT; Vi, LL; Chau, NV; Duong, VT; Chau, NN; Chau, TT; Tuyen, HT; +11 more... (2015) The transfer and decay of maternal antibody against Shigella sonnei in a longitudinal cohort of Vietnamese infants. Vaccine. ISSN 0264-410X DOI: 10.1016/j.vaccine.2015.12.047

Thompson, CN; Zelner, JL; Nhu, TD; Phan, MV; Hoang Le, P; Nguyen Thanh, H; Vu Thuy, D; Minh Nguyen, N; Ha Manh, T; Van Hoang Minh, T; +8 more... (2015) The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam. Health & place, 35. pp. 147-154. ISSN 1353-8292 DOI: 10.1016/j.healthplace.2015.08.001

Tu, LTP; Hoang, NVM; Cuong, NV; Campbell, J; Bryant, JE; Hoa, NT; Kiet, BT; Thompson, C; Duy, DT; Phat, VV; +4 more... (2015) High levels of contamination and antimicrobial-resistant non-typhoidal Salmonella serovars on pig and poultry farms in the Mekong Delta of Vietnam. Epidemiology and infection, 143 (14). pp. 3074-3086. ISSN 0950-2688 DOI: 10.1017/S0950268815000102

Tyagi, N; Farnell, EJ; Fitzsimmons, CM; Ryan, S; Tukahebwa, E; Maizels, RM; Dunne, DW; Thornton, JM; Furnham, N; (2015) Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity. PLoS computational biology, 11 (10). e1004546. ISSN 1553-734X DOI: 10.1371/journal.pcbi.1004546


Van Dung, N; Anh, PH; Van Cuong, N; Hoa, NT; Carrique-Mas, J; Hien, VB; Sharp, C; Rabaa, M; Berto, A; Campbell, J; +5 more... (2015) Large-scale screening and characterization of enteroviruses and kobuviruses infecting pigs in Vietnam. The Journal of general virology, 97 (2). pp. 378-88. ISSN 0022-1317 DOI: 10.1099/jgv.0.000366 Full text not available from this repository.

Vehkala, M; Shubin, M; Connor, TR; Thomson, NR; Corander, J; (2015) Novel R pipeline for analyzing biolog phenotypic microarray data. PLoS One, 10 (3). e0118392. ISSN 1932-6203 DOI: 10.1371/journal.pone.0118392


WAMIN consortium authors include (in alphabetical order):, ; Ahouidi, AD; Amambua-Ngwa, A; Awandare, GA; Bei, AK; Conway, DJ; Diakite, M; Duraisingh, MT; Rayner, JC; Zenonos, ZA; (2015) Malaria Vaccine Development: Focusing Field Erythrocyte Invasion Studies on Phenotypic Diversity: The West African Merozoite Invasion Network (WAMIN). Trends in parasitology. ISSN 1471-4922 DOI: 10.1016/ Full text not available from this repository.

Watermeyer, JM; Hale, VL; Hackett, F; Clare, DK; Cutts, EE; Vakonakis, I; Fleck, RA; Blackman, MJ; Saibil, HR; (2015) A spiral scaffold underlies cytoadherent knobs in Plasmodium falciparum-infected erythrocytes. Blood, 127 (3). pp. 343-351. ISSN 0006-4971 DOI: 10.1182/blood-2015-10-674002 Full text not available from this repository.

Weinert, LA; Chaudhuri, RR; Wang, J; Peters, SE; Corander, J; Jombart, T; Baig, A; Howell, KJ; Vehkala, M; Välimäki, N; +17 more... (2015) Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis. Nat Commun, 6. p. 6740. ISSN 2041-1723 DOI: 10.1038/ncomms7740

Weinert, LA; Chaudhuri, RR; Wang, J; Peters, SE; Corander, J; Jombart, T; Baig, A; Howell, KJ; Vehkala, M; Välimäki, N; +17 more... (2015) Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis. Nat Commun, 6. p. 7272. ISSN 2041-1723 DOI: 10.1038/ncomms8272

Willing, SE; Candela, T; Shaw, HA; Seager, Z; Mesnage, S; Fagan, RP; Fairweather, NF; (2015) Clostridium difficile surface proteins are anchored to the cell wall using CWB2 motifs that recognise the anionic polymer PSII. Molecular microbiology, 96 (3). pp. 596-608. ISSN 0950-382X DOI: 10.1111/mmi.12958 Full text not available from this repository.

Wong, VK; Baker, S; Pickard, DJ; Parkhill, J; Page, AJ; Feasey, NA; Kingsley, RA; Thomson, NR; Keane, JA; Weill, FX; +64 more... (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nature genetics, 47 (6). pp. 632-9. ISSN 1061-4036 DOI: 10.1038/ng.3281 Full text not available from this repository.

Wyres, KL; Gorrie, C; Edwards, DJ; Wertheim, HF; Hsu, LY; Van Kinh, N; Zadoks, R; Baker, S; Holt, KE; (2015) Extensive capsule locus variation and large-scale genomic recombination within the Klebsiella pneumoniae clonal group 258. Genome Biol Evol. ISSN 1759-6653 DOI: 10.1093/gbe/evv062


Zhang, X; Patel, A; Celma, CC; Yu, XK; Roy, P; Zhou, ZH; (2015) Atomic model of a nonenveloped virus reveals pH sensors for a coordinated process of cell entry. Nature structural & molecular biology, 23 (1). pp. 74-80. ISSN 1545-9993 DOI: 10.1038/nsmb.3134 Full text not available from this repository.

This list was generated on Wed Nov 8 17:03:27 2017 GMT.