Baleela, R; Llewellyn, MS; Fitzpatrick, S; Kuhls, K; Schoenian, G; Miles, MA; Mauricio, IL; (2014) Leishmania donovani populations in Eastern Sudan: temporal structuring and a link between human and canine transmission. Parasites & vectors, 7. p. 496. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-014-0496-4

Bhattacharyya, T; Brooks, J; Yeo, M; Carrasco, HJ; Lewis, MD; Llewellyn, MS; Miles, MA; (2010) Analysis of molecular diversity of the Trypanosoma cruzi trypomastigote small surface antigen reveals novel epitopes, evidence of positive selection and potential implications for lineage-specific serology. International journal for parasitology, 40 (8). pp. 921-8. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2010.01.002 Full text not available from this repository.

Costales, JA; Kotton, CN; Zurita-Leal, AC; Garcia-Perez, J; Llewellyn, MS; Messenger, LA; Bhattacharyya, T; Burleigh, BA; (2015) Chagas disease reactivation in a heart transplant patient infected by domestic Trypanosoma cruzi discrete typing unit I (TcIDOM). Parasites & vectors, 8. p. 435. ISSN 1756-3305 DOI: https://doi.org/10.1186/s13071-015-1039-3

Franzén, O; Ochaya, S; Sherwood, E; Lewis, MD; Llewellyn, MS; Miles, MA; Andersson, B; (2011) Shotgun sequencing analysis of Trypanosoma cruzi I Sylvio X10/1 and comparison with T. cruzi VI CL Brener. PLoS neglected tropical diseases, 5 (3). e984. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0000984

Franzén, O; Talavera-López, C; Ochaya, S; Butler, CE; Messenger, LA; Lewis, MD; Llewellyn, MS; Marinkelle, CJ; Tyler, KM; Miles, MA; +1 more... Andersson, B; (2012) Comparative genomic analysis of human infective Trypanosoma cruzi lineages with the bat-restricted subspecies T. cruzi marinkellei. BMC Genomics, 13. p. 531. ISSN 1471-2164 DOI: https://doi.org/10.1186/1471-2164-13-531

Hamilton, PB; Lewis, MD; Cruickshank, C; Gaunt, MW; Yeo, M; Llewellyn, MS; Valente, SA; da Silva, FM; Stevens, JR; Miles, MA; +1 more... Teixeira, MMG; (2011) Identification and lineage genotyping of South American trypanosomes using fluorescent fragment length barcoding. Infection, genetics and evolution, 11 (1). pp. 44-51. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2010.10.012 Full text not available from this repository.

Kassen, R; Llewellyn, M; Rainey, PB; (2004) Ecological constraints on diversification in a model adaptive radiation. Nature, 431 (7011). pp. 984-988. ISSN 0028-0836 DOI: https://doi.org/10.1038/nature02923 Full text not available from this repository.

Lauthier, JJ; Tomasini, N; Barnabe, C; Rumi, MMM; D'Amato, AMA; Ragone, PG; Yeo, M; Lewis, MD; Llewellyn, MS; Basombrio, MA; +3 more... Miles, MA; Tibayrenc, M; Diosque, P; (2012) Candidate targets for Multilocus Sequence Typing of Trypanosoma cruzi: Validation using parasite stocks from the Chaco Region and a set of reference strains. Infection, genetics and evolution, 12 (2). pp. 350-358. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2011.12.008 Full text not available from this repository.

Lewis, MD; Llewellyn, MS; Gaunt, MW; Yeo, M; Carrasco, HJ; Miles, MA; (2009) Flow cytometric analysis and microsatellite genotyping reveal extensive DNA content variation in Trypanosoma cruzi populations and expose contrasts between natural and experimental hybrids. International journal for parasitology, 39 (12). pp. 1305-17. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2009.04.001

Lewis, MD; Llewellyn, MS; Yeo, M; Acosta, N; Gaunt, MW; Miles, MA; (2011) Recent, Independent and Anthropogenic Origins of Trypanosoma cruzi Hybrids. PLoS neglected tropical diseases, 5 (10). e1363. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001363

Lewis, MD; Ma, J; Yeo, M; Carrasco, HJ; Llewellyn, MS; Miles, MA; (2009) Genotyping of Trypanosoma cruzi: systematic selection of assays allowing rapid and accurate discrimination of all known lineages. The American journal of tropical medicine and hygiene, 81 (6). pp. 1041-9. ISSN 0002-9637 DOI: https://doi.org/10.4269/ajtmh.2009.09-0305

Llewellyn, MS; Lewis, MD; Acosta, N; Yeo, M; Carrasco, HJ; Segovia, M; Vargas, J; Torrico, F; Miles, MA; Gaunt, MW; (2009) Trypanosoma cruzi IIc: Phylogenetic and Phylogeographic Insights from Sequence and Microsatellite Analysis and Potential Impact on Emergent Chagas Disease. PLoS neglected tropical diseases, 3 (9). e510. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0000510

Llewellyn, MS; Messenger, LA; Luquetti, AO; Garcia, L; Torrico, F; Tavares, SB; Cheaib, B; Derome, N; Delepine, M; Baulard, C; +3 more... Deleuze, JF; Sauer, S; Miles, MA; (2015) Deep Sequencing of the Trypanosoma cruzi GP63 Surface Proteases Reveals Diversity and Diversifying Selection among Chronic and Congenital Chagas Disease Patients. PLoS neglected tropical diseases, 9 (4). e0003458. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0003458

Llewellyn, MS; Miles, MA; Carrasco, HJ; Lewis, MD; Yeo, M; Vargas, J; Torrico, F; Diosque, P; Valente, V; Valente, SA; +1 more... Gaunt, MW; (2009) Genome-scale multilocus microsatellite typing of Trypanosoma cruzi discrete typing unit I reveals phylogeographic structure and specific genotypes linked to human infection. PLoS pathogens, 5 (5). e1000410. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1000410

Llewellyn, MS; Rivett-Carnac, JB; Fitzpatrick, S; Lewis, MD; Yeo, M; Gaunt, MW; Miles, MA; (2011) Extraordinary Trypanosoma cruzi diversity within single mammalian reservoir hosts implies a mechanism of diversifying selection. International journal for parasitology, 41 (6). pp. 609-14. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2010.12.004

Marcili, A; Lima, L; Valente, VC; Valente, SA; Batista, JS; Junqueira, AC; Souza, AI; da Rosa, JA; Campaner, M; Lewis, MD; +3 more... Llewellyn, MS; Miles, MA; Teixeira, MM; (2009) Comparative phylogeography of Trypanosoma cruzi TCIIc: New hosts, association with terrestrial ecotopes, and spatial clustering. Infection, genetics and evolution. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2009.07.003 Full text not available from this repository.

Messenger, LA; Llewellyn, MS; Bhattacharyya, T; Franzén, O; Lewis, MD; Ramírez, JD; Carrasco, HJ; Andersson, B; Miles, MA; (2012) Multiple Mitochondrial Introgression Events and Heteroplasmy in Trypanosoma cruzi Revealed by Maxicircle MLST and Next Generation Sequencing. PLoS neglected tropical diseases, 6 (4). e1584. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001584

Miles, MA; Llewellyn, MS; Lewis, MD; Yeo, M; Baleela, R; Fitzpatrick, S; Gaunt, MW; Mauricio, IL; (2009) The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future. Parasitology, 136 (12). pp. 1509-28. ISSN 0031-1820 DOI: https://doi.org/10.1017/S0031182009990977

Ocana-Mayorga, S; Llewellyn, MS; Costales, JA; Miles, MA; Grijalva, MJ; (2010) Sex, Subdivision, and Domestic Dispersal of Trypanosoma cruzi Lineage I in Southern Ecuador. PLoS neglected tropical diseases, 4 (12). ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0000915

Ramírez, JD; Guhl, F; Messenger, LA; Lewis, MD; Montilla, M; Cucunuba, Z; Miles, MA; Llewellyn, MS; (2012) Contemporary cryptic sexuality in Trypanosoma cruzi. Molecular ecology. ISSN 0962-1083 DOI: https://doi.org/10.1111/j.1365-294X.2012.05699.x

Segovia, M; Carrasco, HJ; Martínez, CE; Messenger, LA; Nessi, A; Londoño, JC; Espinosa, R; Martínez, C; Alfredo, M; Bonfante-Cabarcas, R; +4 more... Lewis, MD; de Noya, BA; Miles, MA; Llewellyn, MS; (2013) Molecular epidemiologic source tracking of orally transmitted chagas disease, Venezuela. Emerging infectious diseases, 19 (7). pp. 1098-101. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid1907.121576

Yeo, M; Acosta, N; Llewellyn, M; Sanchez, H; Adamson, S; Miles, GA; Lopez, E; Gonzalez, N; Patterson, JS; Gaunt, MW; +2 more... Arias, AR; Miles, MA; (2005) Origins of Chagas disease: Didelphis species are natural hosts of Trypanosoma cruzi I and armadillos hosts of Trypanosoma cruzi II, including hybrids. International journal for parasitology, 35 (2). pp. 225-33. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2004.10.024 Full text not available from this repository.

Yeo, M; Lewis, MD; Carrasco, HJ; Acosta, N; Llewellyn, M; da Silva Valente, SA; de Costa Valente, V; de Arias, AR; Miles, MA; (2006) Resolution of multiclonal infections of Trypanosoma cruzi from naturally infected triatomine bugs and from experimentally infected mice by direct plating on a sensitive solid medium. International journal for parasitology, 37 (1). pp. 111-20. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2006.08.002 Full text not available from this repository.

Yeo, M; Mauricio, IL; Messenger, LA; Lewis, MD; Llewellyn, MS; Acosta, N; Bhattacharyya, T; Diosque, P; Carrasco, HJ; Miles, MA; (2011) Multilocus Sequence Typing (MLST) for Lineage Assignment and High Resolution Diversity Studies in Trypanosoma cruzi. PLoS neglected tropical diseases, 5 (6). e1049. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0001049

Yoshida, N; Tyler, KM; Llewellyn, MS; (2011) Invasion mechanisms among emerging food-borne protozoan parasites. Trends in parasitology, 27 (10). pp. 459-466. ISSN 1471-4922 DOI: https://doi.org/10.1016/j.pt.2011.06.006 Full text not available from this repository.

Zingales, B; Miles, MA; Campbell, DA; Tibayrenc, M; Macedo, AM; Teixeira, MMG; Schijman, AG; Llewellyn, MS; Lages-Silva, E; Machado, CR; +2 more... Andrade, SG; Sturm, NR; (2012) The revised Trypanosoma cruzi subspecific nomenclature: Rationale, epidemiological relevance and research applications. Infection, genetics and evolution, 12 (2). pp. 240-253. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2011.12.009 Full text not available from this repository.

Zumaya-Estrada, FA; Messenger, LA; Lopez-Ordonez, T; Lewis, MD; Flores-Lopez, CA; Martínez-Ibarra, AJ; Pennington, PM; Cordon-Rosales, C; Carrasco, HV; Segovia, M; +2 more... Miles, MA; Llewellyn, MS; (2012) North American import? Charting the origins of an enigmatic Trypanosoma cruzi domestic genotype. Parasit Vectors, 5. p. 226. ISSN 1756-3305 DOI: https://doi.org/10.1186/1756-3305-5-226

Messenger, LA; Yeo, M; Lewis, MD; Llewellyn, MS; Miles, MA; (2015) Molecular Genotyping of Trypanosoma cruzi for Lineage Assignment and Population Genetics. In: Peacock, C, (ed.) Parasite Genomics Protocols, Second Edition. UNSPECIFIED, pp. 297-337. ISBN 9781493914371 DOI: https://doi.org/10.1007/978-1-4939-1438-8_19 Full text not available from this repository.