Coll, F; Phelan, J; Hill-Cawthorne, GA; Nair, MB; Mallard, K; Ali, S; Abdallah, AM; Alghamdi, S; Alsomali, M; Ahmed, AO; +41 more... Portelli, S; Oppong, Y; Alves, A; Bessa, TB; Campino, S; Caws, M; Chatterjee, A; Crampin, AC; Dheda, K; Furnham, N; Glynn, JR; Grandjean, L; Ha, DM; Hasan, R; Hasan, Z; Hibberd, ML; Joloba, M; Jones-López, EC; Matsumoto, T; Miranda, A; Moore, DJ; Mocillo, N; Panaiotov, S; Parkhill, J; Penha, C; Perdigão, J; Portugal, I; Rchiad, Z; Robledo, J; Sheen, P; Shesha, NT; Sirgel, FA; Sola, C; Sousa, EO; Streicher, EM; Van Helden, P; Viveiros, M; Warren, RM; McNerney, R; Pain, A; Clark, TG; (2018) Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0074-3 Full text not available from this repository.

Goheen, MM; Campino, S; Cerami, C; (2017) The role of the red blood cell in host defence against falciparum malaria: an expanding repertoire of evolutionary alterations. British journal of haematology. ISSN 0007-1048 DOI: https://doi.org/10.1111/bjh.14886 Full text not available from this repository.

Amato, R; Miotto, O; Woodrow, CJ; Almagro-Garcia, J; Sinha, I; Campino, S; Mead, D; Drury, E; Kekre, M; Sanders, M; +55 more... Amambua-Ngwa, A; Amaratunga, C; Amenga-Etego, L; Andrianaranjaka, V; Apinjoh, T; Ashley, E; Auburn, S; Awandare, GA; Baraka, V; Barry, A; Boni, MF; Borrmann, S; Bousema, T; Branch, O; Bull, PC; Chotivanich, K; Conway, DJ; Craig, A; Day, NP; Djimde, A; Dolecek, C; Dondorp, AM; Drakeley, C; Duffy, P; Echeverry, DF; Egwang, TG; Fairhurst, RM; Faiz, MA; Fanello, CI; Tran Tinh, H; Hodgson, A; Imwong, M; Ishengoma, D; Lim, P; Lon, C; Marfurt, J; Marsh, K; Mayxay, M; Michon, P; Mobegi, V; Mokuolu, OA; Montgomery, J; Mueller, I; Kyaw, MP; Newton, PN; Nosten, F; Noviyanti, R; Nzila, A; Ocholla, H; Oduro, A; Onyamboko, M; Ouedraogo, J.-, B; Phyo, APP; Plowe, C; Price, RN; (2016) Genomic epidemiology of artemisinin resistant malaria. eLife, 5. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.08714

Auburn, S; Benavente, ED; Miotto, O; Pearson, RD; Amato, R; Grigg, MJ; Barber, BE; William, T; Handayuni, I; Marfurt, J; +9 more... Trimarsanto, H; Noviyanti, R; Sriprawat, K; Nosten, F; Campino, S; Clark, TG; Anstey, NM; Kwiatkowski, DP; Price, RN; (2018) Genomic analysis of a pre-elimination Malaysian Plasmodium vivax population reveals selective pressures and changing transmission dynamics. Nature communications, 9 (1). p. 2585. ISSN 2041-1723 DOI: https://doi.org/10.1038/s41467-018-04965-4

Benavente, ED; Oresegun, DR; de Sessions, PF; Walker, EM; Roper, C; Dombrowski, JG; de Souza, RM; Marinho, CRF; Sutherland, CJ; Hibberd, ML; +4 more... Mohareb, F; Baker, DA; Clark, TG; Campino, S; (2018) Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development. Scientific reports, 8 (1). p. 15429. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-33767-3

Benavente, ED; de Sessions, PF; Moon, RW; Grainger, M; Holder, AA; Blackman, MJ; Roper, C; Drakeley, CJ; Pain, A; Sutherland, CJ; +3 more... Hibberd, ML; Campino, S; Clark, TG; (2017) A reference genome and methylome for the Plasmodium knowlesi A1-H.1 line. International journal for parasitology. ISSN 0020-7519 DOI: https://doi.org/10.1016/j.ijpara.2017.09.008

Campino, S; Benavente, ED; Assefa, S; Thompson, E; Drought, LG; Taylor, CJ; Gorvett, Z; Carret, CK; Flueck, C; Ivens, AC; +4 more... Kwiatkowski, DP; Alano, P; Baker, DA; Clark, TG; (2016) Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines. Malaria journal, 15 (1). p. 229. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1254-1

Campino, Susana; Marin-Menendez, Alejandro; Kemp, Alison; Cross, Nadia; Drought, Laura; Otto, Thomas D; Benavente, Ernest Diez; Ravenhall, Matt; Schwach, Frank; Girling, Gareth; +8 more... Manske, Magnus; Theron, Michel; Gould, Kelda; Drury, Eleanor; Clark, Taane G; Kwiatkowski, Dominic P; Pance, Alena; Rayner, Julian C; (2018) A forward genetic screen reveals a primary role for Plasmodium falciparum Reticulocyte Binding Protein Homologue 2a and 2b in determining alternative erythrocyte invasion pathways. PLoS pathogens, 14 (11). e1007436-. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1007436

Campos, MC; Dombrowski, JG; Phelan, J; Marinho, CRF; Hibberd, M; Clark, TG; Campino, S; (2018) Zika might not be acting alone: Using an ecological study approach to investigate potential co-acting risk factors for an unusual pattern of microcephaly in Brazil. PloS one, 13 (8). e0201452. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0201452

Coll, F; Phelan, J; Hill-Cawthorne, GA; Nair, MB; Mallard, K; Ali, S; Abdallah, AM; Alghamdi, S; Alsomali, M; Ahmed, AO; +41 more... Portelli, S; Oppong, Y; Alves, A; Bessa, TB; Campino, S; Caws, M; Chatterjee, A; Crampin, AC; Dheda, K; Furnham, N; Glynn, JR; Grandjean, L; Minh Ha, D; Hasan, R; Hasan, Z; Hibberd, ML; Joloba, M; Jones-López, EC; Matsumoto, T; Miranda, A; Moore, DJ; Mocillo, N; Panaiotov, S; Parkhill, J; Penha, C; Perdigão, J; Portugal, I; Rchiad, Z; Robledo, J; Sheen, P; Shesha, NT; Sirgel, FA; Sola, C; Oliveira Sousa, E; Streicher, EM; Helden, PV; Viveiros, M; Warren, RM; McNerney, R; Pain, A; Clark, TG; (2018) Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-017-0029-0

Diez Benavente, E; Florez de Sessions, P; Moon, RW; Holder, AA; Blackman, MJ; Roper, C; Drakeley, CJ; Pain, A; Sutherland, CJ; Hibberd, ML; +2 more... Campino, S; Clark, TG; (2017) Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. PLoS genetics, 13 (9). e1007008. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1007008

Diez Benavente, E; Ward, Z; Chan, W; Mohareb, FR; Sutherland, CJ; Roper, C; Campino, S; Clark, TG; (2017) Genomic variation in Plasmodium vivax malaria reveals regions under selective pressure. PloS one, 12 (5). e0177134. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0177134

Dombrowski, JG; Souza, RM; Curry, J; Hinton, L; Silva, NRM; Grignard, L; Gonçalves, LA; Gomes, AR; Epiphanio, S; Drakeley, C; +4 more... Huggett, J; Clark, TG; Campino, S; Marinho, CRF; (2017) G6PD deficiency alleles in a malaria-endemic region in the Western Brazilian Amazon. Malaria journal, 16 (1). p. 253. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-017-1889-6

Dombrowski, Jamille Gregório; Souza, Rodrigo Medeiros de; Lima, Flávia Afonso; Bandeira, Carla Letícia; Murillo, Oscar; Costa, Douglas de Sousa; Peixoto, Erika Paula Machado; Cunha, Marielton Dos Passos; Zanotto, Paolo Marinho de Andrade; Bevilacqua, Estela; +8 more... Grisotto, Marcos Augusto Grigolin; Pedroso de Lima, Antonio Carlos; Singer, Julio da Motta; Campino, Susana; Clark, Taane Gregory; Epiphanio, Sabrina; Gonçalves, Lígia Antunes; Marinho, Cláudio Romero Farias; (2019) Association of Malaria Infection During Pregnancy With Head Circumference of Newborns in the Brazilian Amazon. JAMA network open, 2 (5). e193300. ISSN 2574-3805 DOI: https://doi.org/10.1001/jamanetworkopen.2019.3300

Gomes, AR; Ravenhall, M; Benavente, ED; Talman, A; Sutherland, C; Roper, C; Clark, TG; Campino, S; (2017) Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes. International journal for parasitology Drugs and drug resistance, 7 (2). pp. 174-180. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2017.03.001

Gomes, AR; Ravenhall, M; Benavente, ED; Talman, A; Sutherland, C; Roper, C; Clark, TG; Campino, S; (2017) Corrigendum to "Genetic diversity of next generation antimalarial targets: A baseline for drug resistance surveillance programmes" [Int. J. Parasitol. Drugs and Drug Resist. 7 (2017) 174-180]. International journal for parasitology Drugs and drug resistance. ISSN 2211-3207 DOI: https://doi.org/10.1016/j.ijpddr.2017.11.001

Gomez-Gonzalez, Paula J; Andreu, Nuria; Phelan, Jody E; de Sessions, Paola Florez; Glynn, Judith R; Crampin, Amelia C; Campino, Susana; Butcher, Philip D; Hibberd, Martin L; Clark, Taane G; (2019) An integrated whole genome analysis of Mycobacterium tuberculosis reveals insights into relationship between its genome, transcriptome and methylome. SCIENTIFIC REPORTS, 9 (1). ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-019-41692-2

Grignard, Lynn; Mair, Catherine; Curry, Jonathan; Mahey, Laleta; Bastiaens, Guide JH; Tiono, Alfred B; Okebe, Joseph; Coulibaly, Sam A; Gonçalves, Bronner P; Affara, Muna; +11 more... Ouédraogo, Alphonse; Bougouma, Edith C; Sanou, Guillaume S; Nébié, Issa; Lanke, Kjerstin HW; Sirima, Sodiomon B; d'Alessandro, Umberto; Clark, Taane G; Campino, Susana; Bousema, Teun; Drakeley, Chris; (2019) Bead-based assays to simultaneously detect multiple human inherited blood disorders associated with malaria. Malaria journal, 18 (1). p. 14. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-019-2648-7

Higgins, M; Ravenhall, M; Ward, D; Phelan, J; Ibrahim, A; Forrest, MS; Clark, TG; Campino, S; (2018) PrimedRPA: Primer design for Recombinase polymerase amplification assays. Bioinformatics (Oxford, England). ISSN 1367-4803 DOI: https://doi.org/10.1093/bioinformatics/bty701

McNerney, R; Clark, TG; Campino, S; Rodrigues, C; Dolinger, D; Smith, L; Cabibbe, AM; Dheda, K; Schito, M; (2016) Removing the bottleneck in whole genome sequencing of M. tuberculosis for rapid drug resistance analysis: a call to action. International journal of infectious diseases. ISSN 1201-9712 DOI: https://doi.org/10.1016/j.ijid.2016.11.422

Miles, Alistair; Iqbal, Zamin; Vauterin, Paul; Pearson, Richard; Campino, Susana; Theron, Michel; Gould, Kelda; Mead, Daniel; Drury, Eleanor; O'Brien, John; +12 more... Ruano Rubio, Valentin; MacInnis, Bronwyn; Mwangi, Jonathan; Samarakoon, Upeka; Ranford-Cartwright, Lisa; Ferdig, Michael; Hayton, Karen; Su, Xin-Zhuan; Wellems, Thomas; Rayner, Julian; McVean, Gil; Kwiatkowski, Dominic; (2016) Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum. Genome research, 26 (9). pp. 1288-1299. ISSN 1088-9051 DOI: https://doi.org/10.1101/gr.203711.115

Otto, Thomas D; Böhme, Ulrike; Sanders, Mandy; Reid, Adam; Bruske, Ellen I; Duffy, Craig W; Bull, Pete C; Pearson, Richard D; Abdi, Abdirahman; Dimonte, Sandra; +14 more... Stewart, Lindsay B; Campino, Susana; Kekre, Mihir; Hamilton, William L; Claessens, Antoine; Volkman, Sarah K; Ndiaye, Daouda; Amambua-Ngwa, Alfred; Diakite, Mahamadou; Fairhurst, Rick M; Conway, David J; Franck, Matthias; Newbold, Chris I; Berriman, Matt; (2018) Long read assemblies of geographically dispersed Plasmodium falciparum isolates reveal highly structured subtelomeres. Wellcome open research, 3. 52-. ISSN 2398-502X DOI: https://doi.org/10.12688/wellcomeopenres.14571.1

Pantazis, A; Clark, SJ; (2018) A parsimonious characterization of change in global age-specific and total fertility rates. PloS one, 13 (1). ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0190574

Pearson, Richard D; Amato, Roberto; Auburn, Sarah; Miotto, Olivo; Almagro-Garcia, Jacob; Amaratunga, Chanaki; Suon, Seila; Mao, Sivanna; Noviyanti, Rintis; Trimarsanto, Hidayat; +34 more... Marfurt, Jutta; Anstey, Nicholas M; William, Timothy; Boni, Maciej F; Dolecek, Christiane; Hien, Tinh Tran; White, Nicholas J; Michon, Pascal; Siba, Peter; Tavul, Livingstone; Harrison, Gabrielle; Barry, Alyssa; Mueller, Ivo; Ferreira, Marcelo U; Karunaweera, Nadira; Randrianarivelojosia, Milijaona; Gao, Qi; Hubbart, Christina; Hart, Lee; Jeffery, Ben; Drury, Eleanor; Mead, Daniel; Kekre, Mihir; Campino, Susana; Manske, Magnus; Cornelius, Victoria J; MacInnis, Bronwyn; Rockett, Kirk A; Miles, Alistair; Rayner, Julian C; Fairhurst, Rick M; Nosten, Francois; Price, Ric N; Kwiatkowski, Dominic P; (2016) Genomic analysis of local variation and recent evolution in Plasmodium vivax. Nature genetics, 48 (8). pp. 959-964. ISSN 1061-4036 DOI: https://doi.org/10.1038/ng.3599

Phelan, J; Coll, F; McNerney, R; Ascher, DB; Pires, DE; Furnham, N; Coeck, N; Hill-Cawthorne, GA; Nair, MB; Mallard, K; +6 more... Ramsay, A; Campino, S; Hibberd, ML; Pain, A; Rigouts, L; Clark, TG; (2016) Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance. BMC medicine, 14 (1). p. 31. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-016-0575-9

Phelan, J; O'Sullivan, DM; Machado, D; Ramos, J; Whale, AS; O'Grady, J; Dheda, K; Campino, S; McNerney, R; Viveiros, M; +2 more... Huggett, JF; Clark, TG; (2016) The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs. Genome medicine, 8 (1). p. 132. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-016-0385-x

Phelan, J; de Sessions, PF; Tientcheu, L; Perdigao, J; Machado, D; Hasan, R; Hasan, Z; Bergval, IL; Anthony, R; McNerney, R; +6 more... Antonio, M; Portugal, I; Viveiros, M; Campino, S; Hibberd, ML; Clark, TG; (2018) Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. Scientific reports, 8 (1). p. 160. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18188-y

Phelan, JE; Coll, F; Bergval, I; Anthony, RM; Warren, R; Sampson, SL; Gey van Pittius, NC; Glynn, JR; Crampin, AC; Alves, A; +20 more... Bessa, TB; Campino, S; Dheda, K; Grandjean, L; Hasan, R; Hasan, Z; Miranda, A; Moore, D; Panaiotov, S; Perdigao, J; Portugal, I; Sheen, P; de Oliveira Sousa, E; Streicher, EM; van Helden, PD; Viveiros, M; Hibberd, ML; Pain, A; McNerney, R; Clark, TG; (2016) Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages. BMC genomics, 17 (1). p. 151. ISSN 1471-2164 DOI: https://doi.org/10.1186/s12864-016-2467-y

Ravenhall, M; Benavente, ED; Mipando, M; Jensen, AT; Sutherland, CJ; Roper, C; Sepúlveda, N; Kwiatkowski, DP; Montgomery, J; Phiri, KS; +5 more... Terlouw, A; Craig, A; Campino, S; Ocholla, H; Clark, TG; (2016) Characterizing the impact of sustained sulfadoxine/pyrimethamine use upon the Plasmodium falciparum population in Malawi. Malaria journal, 15 (1). p. 575. ISSN 1475-2875 DOI: https://doi.org/10.1186/s12936-016-1634-6

Ravenhall, M; Campino, S; Sepúlveda, N; Manjurano, A; Nadjm, B; Mtove, G; Wangai, H; Maxwell, C; Olomi, R; Reyburn, H; +4 more... Drakeley, CJ; Riley, EM; Clark, TG; in collaboration with MalariaGEN; (2018) Novel genetic polymorphisms associated with severe malaria and under selective pressure in North-eastern Tanzania. PLoS genetics, 14 (1). e1007172. ISSN 1553-7390 DOI: https://doi.org/10.1371/journal.pgen.1007172

Sepúlveda, N; Manjurano, A; Campino, SG; Lemnge, M; Lusingu, J; Olomi, R; Rockett, KA; Hubbart, C; Jeffreys, A; Rowlands, K; +4 more... MalariaGen consortium; Clark, TG; Riley, EM; Drakeley, CJ; (2017) Malaria host candidate genes validated by association with current, recent and historic measures of transmission intensity. The Journal of infectious diseases. ISSN 0022-1899 DOI: https://doi.org/10.1093/infdis/jix250

Sepúlveda, N; Phelan, J; Diez-Benavente, E; Campino, S; Clark, TG; Hopkins, H; Sutherland, C; Drakeley, CJ; Beshir, KB; (2018) Global analysis of Plasmodium falciparum histidine-rich protein-2 (pfhrp2) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. Infection, genetics and evolution. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2018.04.039

Walk, J; Reuling, IJ; Behet, MC; Meerstein-Kessel, L; Graumans, W; van Gemert, GJ; Siebelink-Stoter, R; van de Vegte-Bolmer, M; Janssen, T; Teelen, K; +11 more... de Wilt, JHW; de Mast, Q; van der Ven, AJ; Diez Benavente, E; Campino, S; Clark, TG; Huynen, MA; Hermsen, CC; Bijker, EM; Scholzen, A; Sauerwein, RW; (2017) Modest heterologous protection after Plasmodium falciparum sporozoite immunization: a double-blind randomized controlled clinical trial. BMC medicine, 15 (1). p. 168. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-017-0923-4