Jombart, T; Eggo, RM; Dodd, PJ; Balloux, F; (2010) Reconstructing disease outbreaks from genetic data: a graph approach. Heredity, 106 (2). pp. 383-90. ISSN 0018-067X DOI: https://doi.org/10.1038/hdy.2010.78 Full text not available from this repository.

Camacho, A; Eggo, RM; Funk, S; Watson, CH; Kucharski, AJ; Edmunds, WJ; (2015) Estimating the probability of demonstrating vaccine efficacy in the declining Ebola epidemic: a Bayesian modelling approach. BMJ open, 5 (12). e009346. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2015-009346

Camacho, A; Eggo, RM; Goeyvaerts, N; Vandebosch, A; Mogg, R; Funk, S; Kucharski, AJ; Watson, CH; Vangeneugden, T; Edmunds, WJ; (2016) Real-time dynamic modelling for the design of a cluster-randomized phase 3 Ebola vaccine trial in Sierra Leone. Vaccine, 35 (4). pp. 544-551. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.12.019

Eggo, RM; Cauchemez, S; Ferguson, NM; (2011) Spatial dynamics of the 1918 influenza pandemic in England, Wales and the United States. Journal of the Royal Society, Interface / the Royal Society, 8 (55). pp. 233-43. ISSN 1742-5689 DOI: https://doi.org/10.1098/rsif.2010.0216

Eggo, RM; Kucharski, AJ; (2018) Expected Duration of Adverse Pregnancy Outcomes after Zika Epidemic. Emerging infectious diseases, 24 (1). pp. 127-130. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2401.170482

Eggo, RM; Scott, JG; Galvani, AP; Meyers, LA; (2016) Respiratory virus transmission dynamics determine timing of asthma exacerbation peaks: Evidence from a population-level model. Proceedings of the National Academy of Sciences of the United States of America, 113 (8). pp. 2194-9. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1518677113

Eggo, RM; Watson, CH; Camacho, A; Kucharski, AJ; Funk, S; Edmunds, WJ; (2015) Duration of Ebola virus RNA persistence in semen of survivors: population-level estimates and projections. Euro surveillance, 20 (48). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2015.20.48.30083

Funk, S; Camacho, A; Kucharski, AJ; Eggo, RM; Edmunds, WJ; (2016) Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model. Epidemics. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2016.11.003

Funk, S; Ciglenecki, I; Tiffany, A; Gignoux, E; Camacho, A; Eggo, RM; Kucharski, AJ; Edmunds, WJ; Bolongei, J; Azuma, P; +9 more... Clement, P; Alpha, TS; Sterk, E; Telfer, B; Engel, G; Parker, LA; Suzuki, M; Heijenberg, N; Reeder, B; (2017) The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2016.0302

Funk, S; Kucharski, AJ; Camacho, A; Eggo, RM; Yakob, L; Murray, LM; Edmunds, WJ; (2016) Comparative Analysis of Dengue and Zika Outbreaks Reveals Differences by Setting and Virus. PLoS neglected tropical diseases, 10 (12). e0005173. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005173

Funk, Sebastian; Camacho, Anton; Kucharski, Adam J; Lowe, Rachel; Eggo, Rosalind M; Edmunds, W John; (2019) Assessing the performance of real-time epidemic forecasts: a case study of Ebola in the Western Area region of Sierra Leone, 2014-15. PLoS computational biology, 15 (2). ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1006785

Hoen, AG; Hladish, TJ; Eggo, RM; Lenczner, M; Brownstein, JS; Meyers, LA; (2015) Epidemic Wave Dynamics Attributable to Urban Community Structure: A Theoretical Characterization of Disease Transmission in a Large Network. Journal of medical Internet research, 17 (7). e169. ISSN 1439-4456 DOI: https://doi.org/10.2196/jmir.3720

Jendrossek, Mario; Edmunds, John; Rohan, Hana; Clifford, Samuel; Mooney, Thomas; Eggo, Rosalind; (2018) Health care worker vaccination against Ebola: vaccine acceptance and employment duration in Sierra Leone. Vaccine. ISSN 0264-410X http://researchonline.lshtm.ac.uk/id/eprint/4651207

Johnson, HC; Lafferty, EI; Eggo, RM; Louie, K; Soldan, K; Waller, J; Edmunds, WJ; (2017) Effect of HPV vaccination and cervical cancer screening in England by ethnicity: a modelling study. The lancet Public health, 3 (1). e44-e51. ISSN 2468-2667 DOI: https://doi.org/10.1016/S2468-2667(17)30238-4

Jombart, T; Eggo, RM; Dodd, P; Balloux, F; (2009) Spatiotemporal dynamics in the early stages of the 2009 A/H1N1 influenza pandemic. PLoS currents, 1. RRN1026. ISSN 2157-3999 http://researchonline.lshtm.ac.uk/id/eprint/2228537

Kucharski, AJ; Eggo, RM; Watson, CH; Camacho, A; Funk, S; Edmunds, WJ; (2016) Effectiveness of Ring Vaccination as Control Strategy for Ebola Virus Disease. Emerging infectious diseases, 22 (1). pp. 105-108. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2201.151410

Kucharski, AJ; Funk, S; Eggo, RM; Mallet, HP; Edmunds, WJ; Nilles, EJ; (2016) Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013-14 French Polynesia Outbreak. PLoS neglected tropical diseases, 10 (5). e0004726. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004726

O'Reilly, KM; Lowe, R; Edmunds, WJ; Mayaud, P; Kucharski, A; Eggo, RM; Funk, S; Bhatia, D; Khan, K; Kraemer, MUG; +8 more... Wilder-Smith, A; Rodrigues, LC; Brasil, P; Massad, E; Jaenisch, T; Cauchemez, S; Brady, OJ; Yakob, L; (2018) Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis. BMC medicine, 16 (1). p. 180. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1158-8

Opatowski, L; Baguelin, M; Eggo, RM; (2018) Influenza interaction with cocirculating pathogens and its impact on surveillance, pathogenesis, and epidemic profile: A key role for mathematical modelling. PLoS pathogens, 14 (2). e1006770. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006770

Polonsky, Jonathan A; Baidjoe, Amrish; Kamvar, Zhian N; Cori, Anne; Durski, Kara; Edmunds, W John; Eggo, Rosalind M; Funk, Sebastian; Kaiser, Laurent; Keating, Patrick; +9 more... de Waroux, Olivier le Polain; Marks, Michael; Moraga, Paula; Morgan, Oliver; Nouvellet, Pierre; Ratnayake, Ruwan; Roberts, Chrissy H; Whitworth, Jimmy; Jombart, Thibaut; (2019) Outbreak analytics: a developing data science for informing the response to emerging pathogens. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1776). p. 20180276. ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2018.0276

Reid, M; Gunn, J; Shah, S; Donovan, M; Eggo, R; Babin, S; Stajner, I; Rogers, E; Ensor, KB; Raun, L; +8 more... Levy, JI; Painter, I; Phipatanakul, W; Yip, F; Nath, A; Streichert, LC; Tong, C; Burkom, H; (2016) Cross-Disciplinary Consultancy to Enhance Predictions of Asthma Exacerbation Risk in Boston. Online journal of public health informatics, 8 (3). e199. ISSN 1947-2579 DOI: https://doi.org/10.5210/ojphi.v8i3.6902

Robert, Alexis; Camacho, Anton; Edmunds, W John; Baguelin, Marc; Muyembe Tamfum, Jean-Jacques; Rosello, Alicia; Kéïta, Sakoba; Eggo, Rosalind M; (2019) Control of Ebola virus disease outbreaks: Comparison of health care worker-targeted and community vaccination strategies. Epidemics. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2019.03.001

Robert, Alexis; Edmunds, W John; Watson, Conall H; Henao-Restrepo, Ana Maria; Gsell, Pierre-Stéphane; Williamson, Elizabeth; Longini, Ira M; Sakoba, Keïta; Kucharski, Adam J; Touré, Alhassane; +13 more... Nadlaou, Sévérine Danmadji; Diallo, Boubacar; Barry, Mamamdou Saidou; Fofana, Thierno Oumar; Camara, Louceny; Kaba, Ibrahima Lansana; Sylla, Lansana; Diaby, Mohamed Lamine; Soumah, Ousmane; Diallo, Abdourahime; Niare, Amadou; Diallo, Abdourhamane; Eggo, Rosalind M; (2019) Determinants of transmission risk during the late stage of the West African Ebola epidemic. American Journal of Epidemiology. ISSN 0002-9262 DOI: https://doi.org/10.1093/aje/kwz090

Sissoko, D; Duraffour, S; Kerber, R; Kolie, JS; Beavogui, AH; Camara, AM; Colin, G; Rieger, T; Oestereich, L; Pályi, B; +31 more... Wurr, S; Guedj, J; Nguyen, TH; Eggo, RM; Watson, CH; Edmunds, WJ; Bore, JA; Koundouno, FR; Cabeza-Cabrerizo, M; Carter, LL; Kafetzopoulou, LE; Kuisma, E; Michel, J; Patrono, LV; Rickett, NY; Singethan, K; Rudolf, M; Lander, A; Pallasch, E; Bockholt, S; Rodríguez, E; Di Caro, A; Wölfel, R; Gabriel, M; Gurry, C; Formenty, P; Keïta, S; Malvy, D; Carroll, MW; Anglaret, X; Günther, S; (2016) Persistence and clearance of Ebola virus RNA from seminal fluid of Ebola virus disease survivors: a longitudinal analysis and modelling study. The Lancet Global health, 5 (1). e80-e88. ISSN 2214-109X DOI: https://doi.org/10.1016/S2214-109X(16)30243-1