LSHTM Research Online

Coll, F; Phelan, J; Hill-Cawthorne, GA; Nair, MB; Mallard, K; Ali, S; Abdallah, AM; Alghamdi, S; Alsomali, M; Ahmed, AO; +41 more... (2018) Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-018-0074-3 Full text not available from this repository.

Coll, F; Phelan, J; Hill-Cawthorne, GA; Nair, MB; Mallard, K; Ali, S; Abdallah, AM; Alghamdi, S; Alsomali, M; Ahmed, AO; +41 more... (2018) Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis. Nature genetics. ISSN 1061-4036 DOI: https://doi.org/10.1038/s41588-017-0029-0

Herman, LS; Fornace, K; Phelan, J; Grigg, MJ; Anstey, NM; William, T; Moon, RW; Blackman, MJ; Drakeley, CJ; Tetteh, KKA; (2018) Identification and validation of a novel panel of Plasmodium knowlesi biomarkers of serological exposure. PLoS neglected tropical diseases, 12 (6). e0006457. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0006457 Full text not available from this repository.

Last, AR; Pickering, H; Roberts, CH; Coll, F; Phelan, J; Burr, SE; Cassama, E; Nabicassa, M; Seth-Smith, HMB; Hadfield, J; +7 more... (2018) Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity. Genome medicine, 10 (1). p. 15. ISSN 1756-994X DOI: https://doi.org/10.1186/s13073-018-0521-x

Palittapongarnpim, P; Ajawatanawong, P; Viratyosin, W; Smittipat, N; Disratthakit, A; Mahasirimongkol, S; Yanai, H; Yamada, N; Nedsuwan, S; Imasanguan, W; +13 more... (2018) Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. Scientific reports, 8 (1). p. 11597. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-018-29986-3

Phelan, J; (2018) A bioinformatic analysis of Mycobacterium tuberculosis and host genomic data. PhD (research paper style) thesis, London School of Hygiene & Tropical Medicine.

Phelan, J; de Sessions, PF; Tientcheu, L; Perdigao, J; Machado, D; Hasan, R; Hasan, Z; Bergval, IL; Anthony, R; McNerney, R; +6 more... (2018) Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally. Sci Rep, 8 (1). p. 160. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-18188-y

Sepúlveda, N; Phelan, J; Diez-Benavente, E; Campino, S; Clark, TG; Hopkins, H; Sutherland, C; Drakeley, CJ; Beshir, KB; (2018) Global analysis of Plasmodium falciparum histidine-rich protein-2 (pfhrp2) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. Infection, genetics and evolution. ISSN 1567-1348 DOI: https://doi.org/10.1016/j.meegid.2018.04.039 Item availability may be restricted.

Campos, MC; Phelan, J; Francisco, AF; Taylor, MC; Lewis, MD; Pain, A; Clark, TG; Kelly, JM; (2017) Genome-wide mutagenesis and multi-drug resistance in American trypanosomes induced by the front-line drug benznidazole. Sci Rep, 7 (1). p. 14407. ISSN 2045-2322 DOI: https://doi.org/10.1038/s41598-017-14986-6

Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107 (Supplement C). pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012 Full text not available from this repository.

Kanji, A; Hasan, R; Ali, A; Zaver, A; Zhang, Y; Imtiaz, K; Shi, W; Clark, TG; McNerney, R; Phelan, J; +3 more... (2017) Single nucleotide polymorphisms in efflux pumps genes in extensively drug resistant Mycobacterium tuberculosis isolates from Pakistan. Tuberculosis (Edinburgh, Scotland), 107. pp. 20-30. ISSN 1472-9792 DOI: https://doi.org/10.1016/j.tube.2017.07.012