Camacho, A; Eggo, RM; Funk, S; Watson, CH; Kucharski, AJ; Edmunds, WJ; (2015) Estimating the probability of demonstrating vaccine efficacy in the declining Ebola epidemic: a Bayesian modelling approach. BMJ open, 5 (12). e009346. ISSN 2044-6055 DOI: https://doi.org/10.1136/bmjopen-2015-009346

Camacho, A; Eggo, RM; Goeyvaerts, N; Vandebosch, A; Mogg, R; Funk, S; Kucharski, AJ; Watson, CH; Vangeneugden, T; Edmunds, WJ; (2016) Real-time dynamic modelling for the design of a cluster-randomized phase 3 Ebola vaccine trial in Sierra Leone. Vaccine, 35 (4). pp. 544-551. ISSN 0264-410X DOI: https://doi.org/10.1016/j.vaccine.2016.12.019

Camacho, A; Kucharski, A; Aki-Sawyerr, Y; White, MA; Flasche, S; Baguelin, M; Pollington, T; Carney, JR; Glover, R; Smout, E; +3 more... Tiffany, A; Edmunds, WJ; Funk, S; (2015) Temporal Changes in Ebola Transmission in Sierra Leone and Implications for Control Requirements: a Real-time Modelling Study. PLoS currents, 7. ISSN 2157-3999 DOI: https://doi.org/10.1371/currents.outbreaks.406ae55e83ec0b5193e30856b9235ed2

Camacho, A; Kucharski, AJ; Funk, S; Breman, J; Piot, P; Edmunds, WJ; (2014) Potential for large outbreaks of Ebola virus disease. Epidemics, 9. pp. 70-8. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2014.09.003

Eames, KTD; Gage, J; Conlan, AJK; Kucharski, A; Gog, JR; (2013) Opening the researcher's world to school students. Mathematics in School, 42 (4). pp. 7-10. ISSN 0305-7259 http://researchonline.lshtm.ac.uk/id/eprint/1367748

Eggo, RM; Kucharski, AJ; (2018) Expected Duration of Adverse Pregnancy Outcomes after Zika Epidemic. Emerging infectious diseases, 24 (1). pp. 127-130. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2401.170482

Eggo, RM; Watson, CH; Camacho, A; Kucharski, AJ; Funk, S; Edmunds, WJ; (2015) Duration of Ebola virus RNA persistence in semen of survivors: population-level estimates and projections. Euro surveillance, 20 (48). ISSN 1025-496X DOI: https://doi.org/10.2807/1560-7917.ES.2015.20.48.30083

Funk, S; Camacho, A; Kucharski, AJ; Eggo, RM; Edmunds, WJ; (2016) Real-time forecasting of infectious disease dynamics with a stochastic semi-mechanistic model. Epidemics. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2016.11.003

Funk, S; Ciglenecki, I; Tiffany, A; Gignoux, E; Camacho, A; Eggo, RM; Kucharski, AJ; Edmunds, WJ; Bolongei, J; Azuma, P; +9 more... Clement, P; Alpha, TS; Sterk, E; Telfer, B; Engel, G; Parker, LA; Suzuki, M; Heijenberg, N; Reeder, B; (2017) The impact of control strategies and behavioural changes on the elimination of Ebola from Lofa County, Liberia. Philosophical transactions of the Royal Society of London Series B, Biological sciences, 372 (1721). ISSN 0962-8436 DOI: https://doi.org/10.1098/rstb.2016.0302

Funk, S; Kucharski, AJ; Camacho, A; Eggo, RM; Yakob, L; Murray, LM; Edmunds, WJ; (2016) Comparative Analysis of Dengue and Zika Outbreaks Reveals Differences by Setting and Virus. PLoS neglected tropical diseases, 10 (12). e0005173. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0005173

Gsell, PS; Camacho, A; Kucharski, AJ; Watson, CH; Bagayoko, A; Danmadji, S; Dean, NE; Diallo, A; Diallo, A; Djidonou, H; +14 more... Doumbia, M; Enwere, G; Higgs, ES; Mauget, T; Mory, D; Riveros, X; Oumar, FT; Toure, A; Vicari, AS; Longini, IM; Edmunds, WJ; Henao-Restrepo, AM; Kieny, MP; Kéïta, S; (2017) Ring vaccination with rVSV-ZEBOV under expanded access in response to an outbreak of Ebola virus disease in Guinea, 2016: an operational and vaccine safety report. The Lancet infectious diseases. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(17)30541-8

Kifle, YW; Goeyvaerts, N; van Kerckhove, K; Willem, L; Kucharski, A; Faes, C; Leirs, H; Hens, N; Beutels, P; (2016) Animal Ownership and Touching Enrich the Context of Social Contacts Relevant to the Spread of Human Infectious Diseases (vol 10, e0133461, 2015). PloS one, 11 (2). ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0148718

Kucharski, A; (2016) Study epidemiology of fake news. Nature, 540 (7634). p. 525. ISSN 0028-0836 http://researchonline.lshtm.ac.uk/id/eprint/3982715 Full text not available from this repository.

Kucharski, A; Gog, JR; (2012) Influenza emergence in the face of evolutionary constraints. Proceedings Biological sciences / The Royal Society, 279 (1729). pp. 645-52. ISSN 0962-8452 DOI: https://doi.org/10.1098/rspb.2011.1168

Kucharski, A; Mills, H; Pinsent, A; Fraser, C; Van Kerkhove, M; Donnelly, CA; Riley, S; (2014) Distinguishing Between Reservoir Exposure and Human-to-Human Transmission for Emerging Pathogens Using Case Onset Data. PLoS currents, 6. ISSN 2157-3999 DOI: https://doi.org/10.1371/currents.outbreaks.e1473d9bfc99d080ca242139a06c455f

Kucharski, A; Riley, S; (2016) Reducing uncertainty about flavivirus infections. The Lancet infectious diseases, 17 (1). pp. 13-15. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(16)30524-2 Full text not available from this repository.

Kucharski, AJ; (2014) IMMUNITY'S ILLU SION Sophisticated mathematical tools suggest that the immune system has a blind spot when it comes to subtle mutations of the influenza virus. Scientific American, 311 (6). pp. 81-85. ISSN 0036-8733 http://researchonline.lshtm.ac.uk/id/eprint/2030977 Full text not available from this repository.

Kucharski, AJ; (2018) Ten simple rules for writing a popular science book. PLoS computational biology, 14 (2). e1005808. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1005808

Kucharski, AJ; Althaus, CL; (2015) The role of superspreading in Middle East respiratory syndrome coronavirus (MERS-CoV) transmission. Euro surveillance, 20 (25). ISSN 1025-496X http://researchonline.lshtm.ac.uk/id/eprint/2228455

Kucharski, AJ; Andreasen, V; Gog, JR; (2015) Capturing the dynamics of pathogens with many strains. Journal of mathematical biology. ISSN 0303-6812 DOI: https://doi.org/10.1007/s00285-015-0873-4

Kucharski, AJ; Baguelin, M; (2017) The role of human immunity and social behavior in shaping influenza evolution. PLoS pathogens, 13 (8). e1006432. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1006432

Kucharski, AJ; Camacho, A; Checchi, F; Waldman, R; Grais, RF; Cabrol, J.-, C; Briand, S; Baguelin, M; Flasche, S; Funk, S; +1 more... Edmunds, WJ; (2015) Evaluation of the Benefits and Risks of Introducing Ebola Community Care Centers, Sierra Leone. Emerging infectious diseases, 21 (3). pp. 393-399. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2103.141892

Kucharski, AJ; Camacho, A; Flasche, S; Glover, RE; Edmunds, WJ; Funk, S; (2015) Measuring the impact of Ebola control measures in Sierra Leone. Proceedings of the National Academy of Sciences of the United States of America, 112 (46). pp. 14366-71. ISSN 0027-8424 DOI: https://doi.org/10.1073/pnas.1508814112

Kucharski, AJ; Conlan, AJ; Eames, KT; (2015) School's Out: Seasonal Variation in the Movement Patterns of School Children. PloS one, 10 (6). e0128070. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0128070

Kucharski, AJ; Edmunds, WJ; (2014) Cross-immunity and age patterns of influenza A(H5N1) infection. Epidemiology and infection, 143 (6). pp. 1119-24. ISSN 0950-2688 DOI: https://doi.org/10.1017/S0950268814001976

Kucharski, AJ; Edmunds, WJ; (2014) Case fatality rate for Ebola virus disease in west Africa. Lancet, 384 (9950). p. 1260. ISSN 0140-6736 DOI: https://doi.org/10.1016/S0140-6736(14)61706-2

Kucharski, AJ; Edmunds, WJ; (2015) Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks. PLoS computational biology, 11 (4). e1004154. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1004154

Kucharski, AJ; Eggo, RM; Watson, CH; Camacho, A; Funk, S; Edmunds, WJ; (2016) Effectiveness of Ring Vaccination as Control Strategy for Ebola Virus Disease. Emerging infectious diseases, 22 (1). pp. 105-108. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2201.151410

Kucharski, AJ; Funk, S; Eggo, RM; Mallet, HP; Edmunds, WJ; Nilles, EJ; (2016) Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013-14 French Polynesia Outbreak. PLoS neglected tropical diseases, 10 (5). e0004726. ISSN 1935-2727 DOI: https://doi.org/10.1371/journal.pntd.0004726

Kucharski, AJ; Gog, JR; (2012) Age profile of immunity to influenza: effect of original antigenic sin. Theoretical population biology, 81 (2). pp. 102-12. ISSN 0040-5809 DOI: https://doi.org/10.1016/j.tpb.2011.12.006 Full text not available from this repository.

Kucharski, AJ; Gog, JR; (2012) The role of social contacts and original antigenic sin in shaping the age pattern of immunity to seasonal influenza. PLoS computational biology, 8 (10). e1002741. ISSN 1553-734X DOI: https://doi.org/10.1371/journal.pcbi.1002741

Kucharski, AJ; Kama, M; Watson, CH; Aubry, M; Funk, S; Henderson, AD; Brady, OJ; Vanhomwegen, J; Manuguerra, JC; Lau, CL; +6 more... Edmunds, WJ; Aaskov, J; Nilles, EJ; Cao-Lormeau, VM; Hué, S; Hibberd, ML; (2018) Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji. eLife, 7. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.34848

Kucharski, AJ; Kwok, KO; Wei, VW; Cowling, BJ; Read, JM; Lessler, J; Cummings, DA; Riley, S; (2014) The contribution of social behaviour to the transmission of influenza a in a human population. PLoS pathogens, 10 (6). e1004206. ISSN 1553-7366 DOI: https://doi.org/10.1371/journal.ppat.1004206

Kucharski, AJ; Lessler, J; Cummings, DAT; Riley, S; (2018) Timescales of influenza A/H3N2 antibody dynamics. PLoS biology, 16 (8). e2004974. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.2004974

Kucharski, AJ; Lessler, J; Read, JM; Zhu, H; Jiang, CQ; Guan, Y; Cummings, DA; Riley, S; (2015) Estimating the Life Course of Influenza A(H3N2) Antibody Responses from Cross-Sectional Data. PLoS biology, 13 (3). e1002082. ISSN 1544-9173 DOI: https://doi.org/10.1371/journal.pbio.1002082

Kucharski, AJ; Mills, HL; Donnelly, CA; Riley, S; (2015) Transmission Potential of Influenza A(H7N9) Virus, China, 2013-2014. Emerging infectious diseases, 21 (5). pp. 852-855. ISSN 1080-6040 DOI: https://doi.org/10.3201/eid2105.141137

Kucharski, AJ; Piot, P; (2014) Containing Ebola virus infection in West Africa. Euro Surveill, 19 (36). pp. 2-4. http://www.eurosurveillance.org/ViewArticle.aspx?A...

Kucharski, AJ; Wenham, C; Brownlee, P; Racon, L; Widmer, N; Eames, KTD; Conlan, AJK; (2018) Structure and consistency of self-reported social contact networks in British secondary schools. PloS one, 13 (7). e0200090. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0200090

Netto, EM; Moreira-Soto, A; Pedroso, C; Höser, C; Funk, S; Kucharski, AJ; Rockstroh, A; Kümmerer, BM; Sampaio, GS; Luz, E; +13 more... Vaz, SN; Dias, JP; Bastos, FA; Cabral, R; Kistemann, T; Ulbert, S; de Lamballerie, X; Jaenisch, T; Brady, OJ; Drosten, C; Sarno, M; Brites, C; Drexler, JF; (2017) High Zika Virus Seroprevalence in Salvador, Northeastern Brazil Limits the Potential for Further Outbreaks. mBio, 8 (6). ISSN 2150-7511 DOI: https://doi.org/10.1128/mBio.01390-17

O'Reilly, KM; Lowe, R; Edmunds, WJ; Mayaud, P; Kucharski, A; Eggo, RM; Funk, S; Bhatia, D; Khan, K; Kraemer, MUG; +8 more... Wilder-Smith, A; Rodrigues, LC; Brasil, P; Massad, E; Jaenisch, T; Cauchemez, S; Brady, OJ; Yakob, L; (2018) Projecting the end of the Zika virus epidemic in Latin America: a modelling analysis. BMC medicine, 16 (1). p. 180. ISSN 1741-7015 DOI: https://doi.org/10.1186/s12916-018-1158-8

Pronyk, P; Rogers, B; Lee, S; Bhatnagar, A; Wolman, Y; Monasch, R; Hipgrave, D; Salama, P; Kucharski, A; Chopra, M; +1 more... UNICEF Sierra Leone Ebola Response Team; (2016) The Effect of Community-Based Prevention and Care on Ebola Transmission in Sierra Leone. American journal of public health. e1-e6. ISSN 0090-0036 DOI: https://doi.org/10.2105/AJPH.2015.303020 Full text not available from this repository.

Rosello, A; Mossoko, M; Flasche, S; Van Hoek, AJ; Mbala, P; Camacho, A; Funk, S; Kucharski, A; Ilunga, BK; Edmunds, WJ; +3 more... Piot, P; Baguelin, M; Muyembe Tamfum, JJ; (2015) Ebola virus disease in the Democratic Republic of the Congo, 1976-2014. eLife, 4. ISSN 2050-084X DOI: https://doi.org/10.7554/eLife.09015

Watson, CH; Coriakula, J; Ngoc, DTT; Flasche, S; Kucharski, AJ; Lau, CL; Thieu, NTV; le Polain de Waroux, O; Rawalai, K; Van, TT; +5 more... Taufa, M; Baker, S; Nilles, EJ; Kama, M; Edmunds, WJ; (2017) Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. PloS one, 12 (12). e0186911. ISSN 1932-6203 DOI: https://doi.org/10.1371/journal.pone.0186911

Wikramaratna, PS; Kucharski, A; Gupta, S; Andreasen, V; McLean, AR; Gog, JR; (2014) Five challenges in modelling interacting strain dynamics. Epidemics, 10. pp. 31-4. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2014.07.005

Yakob, L; Kucharski, A; Hue, S; Edmunds, WJ; (2016) Low risk of a sexually-transmitted Zika virus outbreak. The Lancet infectious diseases, 16 (10). pp. 1100-2. ISSN 1473-3099 DOI: https://doi.org/10.1016/S1473-3099(16)30324-3 Full text not available from this repository.

le Polain de Waroux, O; Cohuet, S; Ndazima, D; Kucharski, AJ; Juan-Giner, A; Flasche, S; Tumwesigye, E; Arinaitwe, R; Mwanga-Amumpaire, J; Boum, Y2nd; +4 more... Nackers, F; Checchi, F; Grais, RF; Edmunds, WJ; (2018) Characteristics of human encounters and social mixing patterns relevant to infectious diseases spread by close contact: a survey in Southwest Uganda. BMC infectious diseases, 18 (1). p. 172. ISSN 1471-2334 DOI: https://doi.org/10.1186/s12879-018-3073-1

le Polain de Waroux, O; Flasche, S; Kucharski, AJ; Langendorf, C; Ndazima, D; Mwanga-Amumpaire, J; Grais, RF; Cohuet, S; Edmunds, WJ; (2018) Identifying human encounters that shape the transmission of Streptococcus pneumoniae and other acute respiratory infections. Epidemics. ISSN 1755-4365 DOI: https://doi.org/10.1016/j.epidem.2018.05.008

Watson, CH; (2018) Seroepidemiological investigations of Salmonella enterica serovar Typhi infection and the potential role of vaccination in the control of typhoid fever in Fiji. PhD (research paper style) thesis, London School of Hygiene & Tropical Medicine. DOI: https://doi.org/10.17037/PUBS.04649219

Finger, F; Kucharski, A; Funk, S; Siddiqui, R; White, K; Edmunds, J; (2018) Real-time analysis of the diphtheria outbreak amongst forcibly displaced Myanmar nationals in Bangladesh. F1000Research, F1000Research. DOI: https://doi.org/10.7490/f1000research.1115484.1