Items where Author is "Clark, TG"

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Abdallah, AM; Hill-Cawthorne, GA; Otto, TD; Coll, F; Guerra-Assunção, JA; Gao, G; Naeem, R; Ansari, H; Malas, TB; Adroub, SA; +10 more... (2015) Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations. Sci Rep, 5. p. 15443. ISSN 2045-2322 DOI: 10.1038/srep15443
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Ali, A; Hasan, Z; McNerney, R; Mallard, K; Hill-Cawthorne, G; Coll, F; Nair, M; Pain, A; Clark, TG; Hasan, R; (2015) Whole Genome Sequencing Based Characterization of Extensively Drug-Resistant Mycobacterium tuberculosis Isolates from Pakistan. PLoS One, 10 (2). e0117771. ISSN 1932-6203 DOI: 10.1371/journal.pone.0117771
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Ali, O; Aseffa, A; Bedru, A; Lemma, T; Moti, T; Worku, A; Xabher, HG; Yamuah, L; Boukary, RM; Collard, JM; +71 more... (2013) Meningococcal carriage in the African meningitis belt. Tropical medicine & international health , 18 (8). pp. 968-978. ISSN 1360-2276 DOI: 10.1111/tmi.12125
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Almagro-Garcia, J; Manske, M; Carret, C; Campino, S; Auburn, S; Macinnis, BL; Maslen, G; Pain, A; Newbold, CI; Kwiatkowski, DP; +1 more... (2009) SnoopCGH: software for visualizing comparative genomic hybridization data. Bioinformatics (Oxford, England), 25 (20). pp. 2732-3. ISSN 1367-4803 DOI: 10.1093/bioinformatics/btp488
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Auburn, S; Campino, S; Miotto, O; Djimde, AA; Zongo, I; Manske, M; Maslen, G; Mangano, V; Alcock, D; MacInnis, B; +5 more... (2012) Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data. PLoS One, 7 (2). ISSN 1932-6203 DOI: 10.1371/journal.pone.0032891
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Auburn, S; Fry, AE; Clark, TG; Campino, S; Diakite, M; Green, A; Richardson, A; Jallow, M; Sisay-Joof, F; Pinder, M; +5 more... (2010) Further evidence supporting a role for gs signal transduction in severe malaria pathogenesis. PLoS One, 5 (4). e10017. ISSN 1932-6203 DOI: 10.1371/journal.pone.0010017
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Auburn, S; Marfurt, J; Maslen, G; Campino, S; Ruano Rubio, V; Manske, M; Machunter, B; Kenangalem, E; Noviyanti, R; Trianty, L; +12 more... (2013) Effective Preparation of Plasmodium vivax Field Isolates for High-Throughput Whole Genome Sequencing. PLoS One, 8 (1). e53160. ISSN 1932-6203 DOI: 10.1371/journal.pone.0053160
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Band, G; Le, QS; Jostins, L; Pirinen, M; Kivinen, K; Jallow, M; Sisay-Joof, F; Bojang, K; Pinder, M; Sirugo, G; +25 more... (2013) Imputation-based meta-analysis of severe malaria in three african populations. PLoS genetics, 9 (5). e1003509. ISSN 1553-7390 DOI: 10.1371/journal.pgen.1003509
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Benavente, ED; Coll, F; Furnham, N; McNerney, R; Glynn, JR; Campino, S; Pain, A; Mohareb, FR; Clark, TG; (2015) PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis. BMC Bioinformatics, 16. p. 155. ISSN 1471-2105 DOI: 10.1186/s12859-015-0603-3
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Campino, S; Auburn, S; Kivinen, K; Zongo, I; Ouedraogo, JB; Mangano, V; Djimde, A; Doumbo, OK; Kiara, SM; Nzila, A; +21 more... (2011) Population Genetic Analysis of Plasmodium falciparum Parasites Using a Customized Illumina GoldenGate Genotyping Assay. PLoS One, 6 (6). ISSN 1932-6203 DOI: 10.1371/journal.pone.0020251
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Campino, S; Benavente, ED; Assefa, S; Thompson, E; Drought, LG; Taylor, CJ; Gorvett, Z; Carret, CK; Flueck, C; Ivens, AC; +4 more... (2016) Genomic variation in two gametocyte non-producing Plasmodium falciparum clonal lines. Malar J, 15 (1). p. 229. ISSN 1475-2875 DOI: 10.1186/s12936-016-1254-1
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Campino, S; Forton, J; Auburn, S; Fry, A; Diakite, M; Richardson, A; Hull, J; Jallow, M; Sisay-Joof, F; Pinder, M; +5 more... (2009) TLR9 polymorphisms in African populations: no association with severe malaria, but evidence of cis-variants acting on gene expression. Malar J, 8. p. 44. ISSN 1475-2875 DOI: 10.1186/1475-2875-8-44
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Campino, S; Forton, J; Raj, S; Mohr, B; Auburn, S; Fry, A; Mangano, VD; Vandiedonck, C; Richardson, A; Rockett, K; +2 more... (2008) Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations. PLoS One, 3 (12). e4105. ISSN 1932-6203 DOI: 10.1371/journal.pone.0004105
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Clark, TG; Andrew, T; Cooper, GM; Margulies, EH; Mullikin, JC; Balding, DJ; (2007) Functional constraint and small insertions and deletions in the ENCODE regions of the human genome. Genome biology, 8 (9). R180. ISSN 1465-6906 DOI: 10.1186/gb-2007-8-9-r180
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Clark, TG; Bradburn, MJ; Love, SB; Altman, DG; (2003) Survival analysis part I: basic concepts and first analyses. British journal of cancer, 89 (2). pp. 232-8. ISSN 0007-0920 DOI: 10.1038/sj.bjc.6601118
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Clark, TG; Bradburn, MJ; Love, SB; Altman, DG; (2003) Survival analysis part IV: further concepts and methods in survival analysis. British journal of cancer, 89 (5). pp. 781-6. ISSN 0007-0920 DOI: 10.1038/sj.bjc.6601117
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Clark, TG; Stewart, ME; Altman, DG; Gabra, H; Smyth, JF; (2001) A prognostic model for ovarian cancer. British journal of cancer, 85 (7). pp. 944-52. ISSN 0007-0920 DOI: 10.1038/sj.bjc.6692030
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Clarke, GM; Rockett, K; Kivinen, K; Hubbart, C; Jeffreys, AE; Rowlands, K; Jallow, M; Conway, DJ; Bojang, KA; Pinder, M; +68 more... (2017) Characterisation of the opposing effects of G6PD deficiency on cerebral malaria and severe malarial anaemia. Elife, 6. ISSN 2050-084X DOI: 10.7554/eLife.15085
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Coker, OO; Chaiprasert, A; Ngamphiw, C; Tongsima, S; Regmi, SM; Clark, TG; Ong, RT; Teo, YY; Prammananan, T; Palittapongarnpim, P; (2016) Genetic signatures of Mycobacterium tuberculosis Nonthaburi genotype revealed by whole genome analysis of isolates from tuberculous meningitis patients in Thailand. PeerJ, 4. e1905. ISSN 2167-8359 DOI: 10.7717/peerj.1905
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Coll, F; McNerney, R; Guerra-Assunção, JA; Glynn, JR; Perdigão, J; Viveiros, M; Portugal, I; Pain, A; Martin, N; Clark, TG; (2014) A robust SNP barcode for typing Mycobacterium tuberculosis complex strains. Nat Commun, 5. p. 4812. ISSN 2041-1723 DOI: 10.1038/ncomms5812
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Coll, F; McNerney, R; Preston, MD; Guerra-Assunção, JA; Warry, A; Hill-Cawthorne, G; Mallard, K; Nair, M; Miranda, A; Alves, A; +9 more... (2015) Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences. Genome Med, 7 (1). p. 51. ISSN 1756-994X DOI: 10.1186/s13073-015-0164-0
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Coll, F; Preston, M; Guerra-Assunção, JA; Hill-Cawthorn, G; Harris, D; Perdigão, J; Viveiros, M; Portugal, I; Drobniewski, F; Gagneux, S; +6 more... (2014) PolyTB: A genomic variation map for Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland), 94 (3). pp. 346-54. ISSN 1472-9792 DOI: 10.1016/j.tube.2014.02.005
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Coll I Cerezo, F; (2015) Bioinformatic analysis of Mycobacterium tuberculosis whole genome data. PhD thesis, London School of Hygiene & Tropical Medicine.
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Daelemans, C; Ritchie, ME; Smits, G; Abu-Amero, S; Sudbery, IM; Forrest, MS; Campino, S; Clark, TG; Stanier, P; Kwiatkowski, D; +5 more... (2010) High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta. BMC Genet, 11. p. 25. ISSN 1471-2156 DOI: 10.1186/1471-2156-11-25
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Dombrowski, JG; Souza, RM; Curry, J; Hinton, L; Silva, NRM; Grignard, L; Gonçalves, LA; Gomes, AR; Epiphanio, S; Drakeley, C; +4 more... (2017) G6PD deficiency alleles in a malaria-endemic region in the Western Brazilian Amazon. Malar J, 16 (1). p. 253. ISSN 1475-2875 DOI: 10.1186/s12936-017-1889-6
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Fry, AE; Ghansa, A; Small, KS; Palma, A; Auburn, S; Diakite, M; Green, A; Campino, S; Teo, YY; Clark, TG; +18 more... (2009) Positive selection of a CD36 nonsense variant in sub-Saharan Africa, but no association with severe malaria phenotypes. Human molecular genetics, 18 (14). pp. 2683-92. ISSN 0964-6906 DOI: 10.1093/hmg/ddp192
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Getachew, S; To, S; Trimarsanto, H; Thriemer, K; Clark, TG; Petros, B; Aseffa, A; Price, RN; Auburn, S; (2015) Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia. PLoS One, 10 (10). e0140780. ISSN 1932-6203 DOI: 10.1371/journal.pone.0140780
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Glynn, JR; Guerra-Assunção, JA; Houben, RM; Sichali, L; Mzembe, T; Mwaungulu, LK; Mwaungulu, JN; McNerney, R; Khan, P; Parkhill, J; +2 more... (2015) Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi. PLoS One, 10 (7). e0132840. ISSN 1932-6203 DOI: 10.1371/journal.pone.0132840
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Guerra-Assunção, J; Crampin, A; Houben, R; Mzembe, T; Mallard, K; Coll, F; Khan, P; Banda, L; Chiwaya, A; Pereira, R; +5 more... (2015) Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area. Elife, 4. ISSN 2050-084X DOI: 10.7554/eLife.05166
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Hill-Cawthorne, GA; Hudson, LO; El Ghany, MF; Piepenburg, O; Nair, M; Dodgson, A; Forrest, MS; Clark, TG; Pain, A; (2014) Recombinations in Staphylococcal Cassette Chromosome mec Elements Compromise the Molecular Detection of Methicillin Resistance in Staphylococcus aureus. PLoS One, 9 (6). e101419. ISSN 1932-6203 DOI: 10.1371/journal.pone.0101419
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Kafsack, BF; Rovira-Graells, N; Clark, TG; Bancells, C; Crowley, VM; Campino, SG; Williams, AE; Drought, LG; Kwiatkowski, DP; Baker, DA; +2 more... (2014) A transcriptional switch underlies commitment tosexual development in malaria parasites. Nature, 507 (7491). pp. 248-52. ISSN 0028-0836 DOI: 10.1038/nature12920
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Kanji, A; Hasan, R; Zaver, A; Ali, A; Imtiaz, K; Ashraf, M; Clark, TG; McNerney, R; Shafiq, S; Hasan, Z; (2016) Alternate efflux pump mechanism may contribute to drug resistance in extensively drug-resistant isolates of Mycobacterium tuberculosis. International journal of mycobacteriology, 5 Suppl 1. S97-S98. ISSN 2212-5531 DOI: 10.1016/j.ijmyco.2016.09.064
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Kariuki, SM; Rockett, K; Clark, TG; Reyburn, H; Agbenyega, T; Taylor, TE; Birbeck, GL; Williams, TN; Newton, CR; (2013) The genetic risk of acute seizures in African children with falciparum malaria. Epilepsia, 54 (6). pp. 990-1001. ISSN 0013-9580 DOI: 10.1111/epi.12173
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Kim, JY; Goo, YK; Zo, YG; Ji, SY; Trimarsanto, H; To, S; Clark, TG; Price, RN; Auburn, S; (2016) Further Evidence of Increasing Diversity of Plasmodium vivax in the Republic of Korea in Recent Years. PLoS One, 11 (3). e0151514. ISSN 1932-6203 DOI: 10.1371/journal.pone.0151514
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Lawley, TD; Clare, S; Walker, AW; Stares, MD; Connor, TR; Raisen, C; Goulding, D; Rad, R; Schreiber, F; Brandt, C; +7 more... (2012) Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS pathogens, 8 (10). e1002995. ISSN 1553-7366 DOI: 10.1371/journal.ppat.1002995
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Liu, Y; Auburn, S; Cao, J; Trimarsanto, H; Zhou, H; Gray, K.-, A; Clark, TG; Price, RN; Cheng, Q; Huang, R; +1 more... (2014) Genetic diversity and population structure of Plasmodium vivax in Central China. Malaria Journal, 13. p. 262. ISSN 1475-2875 DOI: 10.1186/1475-2875-13-262
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Maiga, B; Dolo, A; Touré, O; Dara, V; Tapily, A; Campino, S; Sepulveda, N; Risley, P; Silva, N; Corran, P; +6 more... (2013) Human candidate polymorphisms in sympatric ethnic groups differing in malaria susceptibility in mali. PLoS One, 8 (10). e75675. ISSN 1932-6203 DOI: 10.1371/journal.pone.0075675
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Mangano, VD; Clark, TG; Auburn, S; Campino, S; Diakite, M; Fry, AE; Green, A; Richardson, A; Jallow, M; Sisay-Joof, F; +11 more... (2009) Lack of association of interferon regulatory factor 1 with severe malaria in affected child-parental trio studies across three African populations. PLoS One, 4 (1). e4206. ISSN 1932-6203 DOI: 10.1371/journal.pone.0004206
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Manjurano, A; Clark, TG; Nadjm, B; Mtove, G; Wangai, H; Sepulveda, N; Campino, SG; Maxwell, C; Olomi, R; Rockett, KR; +5 more... (2012) Candidate human genetic polymorphisms and severe malaria in a tanzanian population. PLoS One, 7 (10). e47463. ISSN 1932-6203 DOI: 10.1371/journal.pone.0047463
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Manske, M; Miotto, O; Campino, S; Auburn, S; Almagro-Garcia, J; Maslen, G; O'Brien, J; Djimde, A; Doumbo, O; Zongo, I; +46 more... (2012) Analysis of Plasmodium falciparum diversity in natural infections by deep sequencing. Nature, 487 (7407). pp. 375-9. ISSN 0028-0836 DOI: 10.1038/nature11174
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MenAfriCar Consortium; , COLLABORATORS; Ali, O; Aseffa, A; Bedru Omer, A; Lema, Ts; Moti Demissie, T; Tekletsion, Y; Worku, A; Guebre Xabher, H; +69 more... (2016) Household transmission of Neisseria meningitidis in the African meningitis belt: a longitudinal cohort study. Lancet Glob Health, 4 (12). e989-e995. ISSN 2214-109X DOI: 10.1016/S2214-109X(16)30244-3
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Noviyanti, R; Coutrier, F; Utami, RA; Trimarsanto, H; Tirta, YK; Trianty, L; Kusuma, A; Sutanto, I; Kosasih, A; Kusriastuti, R; +7 more... (2015) Contrasting Transmission Dynamics of Co-endemic Plasmodium vivax and P. falciparum: Implications for Malaria Control and Elimination. PLoS neglected tropical diseases, 9 (5). e0003739. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0003739
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Ocholla, H; Preston, MD; Mipando, M; Jensen, AT; Campino, S; MacInnis, B; Alcock, D; Terlouw, A; Zongo, I; Oudraogo, JB; +13 more... (2014) Whole-genome scans provide evidence of adaptive evolution in Malawian Plasmodium falciparum isolates. The Journal of infectious diseases, 210 (12). pp. 1991-2000. ISSN 0022-1899 DOI: 10.1093/infdis/jiu349
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Phelan, J; Coll, F; McNerney, R; Ascher, DB; Pires, DE; Furnham, N; Coeck, N; Hill-Cawthorne, GA; Nair, MB; Mallard, K; +6 more... (2016) Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance. BMC Med, 14 (1). p. 31. ISSN 1741-7015 DOI: 10.1186/s12916-016-0575-9
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Phelan, J; O'Sullivan, DM; Machado, D; Ramos, J; Whale, AS; O'Grady, J; Dheda, K; Campino, S; McNerney, R; Viveiros, M; +2 more... (2016) The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs. Genome Med, 8 (1). p. 132. ISSN 1756-994X DOI: 10.1186/s13073-016-0385-x
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Phelan, JE; Coll, F; Bergval, I; Anthony, RM; Warren, R; Sampson, SL; Gey van Pittius, NC; Glynn, JR; Crampin, AC; Alves, A; +20 more... (2016) Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages. BMC Genomics, 17 (1). p. 151. ISSN 1471-2164 DOI: 10.1186/s12864-016-2467-y
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Preston, MD; Campino, S; Assefa, SA; Echeverry, DF; Ocholla, H; Amambua-Ngwa, A; Stewart, LB; Conway, DJ; Borrmann, S; Michon, P; +12 more... (2014) A barcode of organellar genome polymorphisms identifies the geographic origin of Plasmodium falciparum strains. Nat Commun, 5. p. 4052. ISSN 2041-1723 DOI: 10.1038/ncomms5052
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Preston, MD; Manske, M; Horner, N; Assefa, S; Campino, S; Auburn, S; Zongo, I; Ouedraogo, JB; Nosten, F; Anderson, T; +1 more... (2012) VarB: A Variation Browsing and analysis tool for variants derived from next-generation sequencing data. Bioinformatics (Oxford, England), 28 (22). pp. 2983-5. ISSN 1367-4803 DOI: 10.1093/bioinformatics/bts557
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Roberts, CH; Franklin, CS; Makalo, P; Joof, H; Sarr, I; Mahdi, OS; Sillah, A; Bah, M; Payne, F; Jeffreys, AE; +13 more... (2015) Conjunctival fibrosis and the innate barriers to Chlamydia trachomatis intracellular infection: a genome wide association study. Sci Rep, 5. p. 17447. ISSN 2045-2322 DOI: 10.1038/srep17447
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Robinson, T; Campino, SG; Auburn, S; Assefa, SA; Polley, SD; Manske, M; MacInnis, B; Rockett, KA; Maslen, GL; Sanders, M; +5 more... (2011) Drug-Resistant Genotypes and Multi-Clonality in Plasmodium falciparum Analysed by Direct Genome Sequencing from Peripheral Blood of Malaria Patients. PLoS One, 6 (8). e23204. ISSN 1932-6203 DOI: 10.1371/journal.pone.0023204
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Rockett, KA; Clarke, GM; Fitzpatrick, K; Hubbart, C; Jeffreys, AE; Rowlands, K; Craik, R; Jallow, M; Conway, DJ; Bojang, KA; +73 more... (2014) Reappraisal of known malaria resistance loci in a large multicenter study. Nature genetics, 46 (11). pp. 1197-1204. ISSN 1061-4036 DOI: 10.1038/ng.3107
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Samad, H; Coll, F; Preston, MD; Ocholla, H; Fairhurst, RM; Clark, TG; (2015) Imputation-Based Population Genetics Analysis of Plasmodium falciparum Malaria Parasites. PLoS genetics, 11 (4). e1005131. ISSN 1553-7390 DOI: 10.1371/journal.pgen.1005131
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Sambo, MR; Trovoada, MJ; Benchimol, C; Quinhentos, V; Gonçalves, L; Velosa, R; Marques, MI; Sepúlveda, N; Clark, TG; Mustafa, S; +3 more... (2010) Transforming growth factor beta 2 and heme oxygenase 1 genes are risk factors for the cerebral malaria syndrome in Angolan children. PLoS One, 5 (6). e11141. ISSN 1932-6203 DOI: 10.1371/journal.pone.0011141
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Shelton, JM; Corran, P; Risley, P; Silva, N; Hubbart, C; Jeffreys, A; Rowlands, K; Craik, R; Cornelius, V; Hensmann, M; +48 more... (2015) Genetic determinants of anti-malarial acquired immunity in a large multi-centre study. Malar J, 14 (1). p. 333. ISSN 1475-2875 DOI: 10.1186/s12936-015-0833-x
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Sousa, I; Clark, TG; Holt, R; Pagnamenta, AT; Mulder, EJ; Minderaa, RB; Bailey, AJ; Battaglia, A; Klauck, SM; Poustka, F; +2 more... (2010) Polymorphisms in leucine-rich repeat genes are associated with autism spectrum disorder susceptibility in populations of European ancestry. Mol Autism, 1 (1). p. 7. ISSN 2040-2392 DOI: 10.1186/2040-2392-1-7
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Takala-Harrison, S; Clark, TG; Jacob, CG; Cummings, MP; Miotto, O; Dondorp, AM; Fukuda, MM; Nosten, F; Noedl, H; Imwong, M; +29 more... (2013) Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia. Proceedings of the National Academy of Sciences of the United States of America, 110 (1). pp. 240-5. ISSN 0027-8424 DOI: 10.1073/pnas.1211205110 Item availability may be restricted.
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Toure, O; Konate, S; Sissoko, S; Niangaly, A; Barry, A; Sall, AH; Diarra, E; Poudiougou, B; Sepulveda, N; Campino, S; +5 more... (2012) Candidate polymorphisms and severe malaria in a Malian population. PLoS One, 7 (9). e43987. ISSN 1932-6203 DOI: 10.1371/journal.pone.0043987
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Trimarsanto, H; Benavente, ED; Noviyanti, R; Utami, RA; Trianty, L; Pava, Z; Getachew, S; Kim, JY; Goo, YK; Wangchuck, S; +7 more... (2017) VivaxGEN: An open access platform for comparative analysis of short tandem repeat genotyping data in Plasmodium vivax Populations. PLoS neglected tropical diseases, 11 (3). e0005465. ISSN 1935-2727 DOI: 10.1371/journal.pntd.0005465
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da Silva Santos, S; Clark, TG; Campino, S; Suarez-Mutis, MC; Rockett, KA; Kwiatkowski, DP; Fernandes, O; (2012) Investigation of host candidate malaria-associated risk/protective SNPs in a Brazilian Amazonian population. PLoS One, 7 (5). e36692. ISSN 1932-6203 DOI: 10.1371/journal.pone.0036692
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This list was generated on Fri Sep 22 06:27:37 2017 BST.